miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23323 5' -58.1 NC_005259.1 + 68245 0.66 0.640869
Target:  5'- gCUCaAGGaugaccgcagCCUUGcgcucgucguaGGCACCGUCCUCGc -3'
miRNA:   3'- -GAG-UCCg---------GGAAC-----------UCGUGGCAGGAGCc -5'
23323 5' -58.1 NC_005259.1 + 34904 0.66 0.61971
Target:  5'- -aCGGGCCgCUcGGGCAUCacacugcugCCUCGGg -3'
miRNA:   3'- gaGUCCGG-GAaCUCGUGGca-------GGAGCC- -5'
23323 5' -58.1 NC_005259.1 + 31897 0.66 0.61971
Target:  5'- uCUCaAGGCCCggcgcGAGCGCCucaaucucGUCacgcaCUCGGg -3'
miRNA:   3'- -GAG-UCCGGGaa---CUCGUGG--------CAG-----GAGCC- -5'
23323 5' -58.1 NC_005259.1 + 23209 0.67 0.567128
Target:  5'- gUguGGCCCaaggacGGGUACCGUCCgcUCGa -3'
miRNA:   3'- gAguCCGGGaa----CUCGUGGCAGG--AGCc -5'
23323 5' -58.1 NC_005259.1 + 32404 0.67 0.546384
Target:  5'- gCUC-GGCUCacacguAGCACCGugUCCUCGGg -3'
miRNA:   3'- -GAGuCCGGGaac---UCGUGGC--AGGAGCC- -5'
23323 5' -58.1 NC_005259.1 + 16432 0.68 0.515749
Target:  5'- gUCGagcGGCCCaaaccGGGCACCGUCggcaUCGGu -3'
miRNA:   3'- gAGU---CCGGGaa---CUCGUGGCAGg---AGCC- -5'
23323 5' -58.1 NC_005259.1 + 33826 0.68 0.515749
Target:  5'- --gGGGUCCggcgaGAGCuuuaucucGCCGUCCUUGGu -3'
miRNA:   3'- gagUCCGGGaa---CUCG--------UGGCAGGAGCC- -5'
23323 5' -58.1 NC_005259.1 + 62879 0.68 0.514739
Target:  5'- -gUAGGCCgCUcggucauUGAGCgacGCCGcuUCCUCGGu -3'
miRNA:   3'- gaGUCCGG-GA-------ACUCG---UGGC--AGGAGCC- -5'
23323 5' -58.1 NC_005259.1 + 46467 0.68 0.495715
Target:  5'- gCUCAGaUCCUUGAGCGCUGUggccacgcCCUUGa -3'
miRNA:   3'- -GAGUCcGGGAACUCGUGGCA--------GGAGCc -5'
23323 5' -58.1 NC_005259.1 + 52399 0.69 0.485831
Target:  5'- cCUCGGGCCaucgaggugUGGGCGCUcgaCUCGGg -3'
miRNA:   3'- -GAGUCCGGga-------ACUCGUGGcagGAGCC- -5'
23323 5' -58.1 NC_005259.1 + 56257 0.72 0.327244
Target:  5'- aUCGGcGgCCUUGAGCGCCG-CCgccCGGc -3'
miRNA:   3'- gAGUC-CgGGAACUCGUGGCaGGa--GCC- -5'
23323 5' -58.1 NC_005259.1 + 42038 0.72 0.290559
Target:  5'- gUCGGGUCgacu-GCGCUGUCCUCGGg -3'
miRNA:   3'- gAGUCCGGgaacuCGUGGCAGGAGCC- -5'
23323 5' -58.1 NC_005259.1 + 9691 0.77 0.13849
Target:  5'- gUCgAGGUcgCCgcucacUGGGCACCGUCCUCGGg -3'
miRNA:   3'- gAG-UCCG--GGa-----ACUCGUGGCAGGAGCC- -5'
23323 5' -58.1 NC_005259.1 + 44756 0.78 0.131281
Target:  5'- --gAGGCUCUUGAGCACCGaUCCcgcaUCGGc -3'
miRNA:   3'- gagUCCGGGAACUCGUGGC-AGG----AGCC- -5'
23323 5' -58.1 NC_005259.1 + 10409 1.09 0.000749
Target:  5'- gCUCAGGCCCUUGAGCACCGUCCUCGGc -3'
miRNA:   3'- -GAGUCCGGGAACUCGUGGCAGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.