miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23324 5' -54.8 NC_005259.1 + 1500 0.68 0.682819
Target:  5'- -gGCaguGUUCGcCACGCucacgcugucACUGACGAUCa -3'
miRNA:   3'- ggCGg--CAAGC-GUGCG----------UGACUGCUAGa -5'
23324 5' -54.8 NC_005259.1 + 1890 0.69 0.661448
Target:  5'- gCCGCCGagaUCGCGCGaGCUGcCGAg-- -3'
miRNA:   3'- -GGCGGCa--AGCGUGCgUGACuGCUaga -5'
23324 5' -54.8 NC_005259.1 + 2532 0.71 0.554502
Target:  5'- aCGCCac-CGCGCGCAUUGGacaGAUCg -3'
miRNA:   3'- gGCGGcaaGCGUGCGUGACUg--CUAGa -5'
23324 5' -54.8 NC_005259.1 + 6122 0.66 0.794798
Target:  5'- gCCGCCGcuaCGCGgGCACUGcaACGcgUa -3'
miRNA:   3'- -GGCGGCaa-GCGUgCGUGAC--UGCuaGa -5'
23324 5' -54.8 NC_005259.1 + 6354 0.68 0.736283
Target:  5'- gUGCCGUaCGUGCGCACguugucgccgggcgcGAUGGUCa -3'
miRNA:   3'- gGCGGCAaGCGUGCGUGa--------------CUGCUAGa -5'
23324 5' -54.8 NC_005259.1 + 9667 0.72 0.47269
Target:  5'- cCCGuuGUUCcaCAUGCGCUGcCGGUCg -3'
miRNA:   3'- -GGCggCAAGc-GUGCGUGACuGCUAGa -5'
23324 5' -54.8 NC_005259.1 + 9825 0.7 0.597012
Target:  5'- aCCGCCGggUGCG-GCGCUGGCccaAUCg -3'
miRNA:   3'- -GGCGGCaaGCGUgCGUGACUGc--UAGa -5'
23324 5' -54.8 NC_005259.1 + 10147 1.09 0.001694
Target:  5'- cCCGCCGUUCGCACGCACUGACGAUCUc -3'
miRNA:   3'- -GGCGGCAAGCGUGCGUGACUGCUAGA- -5'
23324 5' -54.8 NC_005259.1 + 12807 0.68 0.735255
Target:  5'- aCGCUG-UCGCGCGCAC--GCGcgCg -3'
miRNA:   3'- gGCGGCaAGCGUGCGUGacUGCuaGa -5'
23324 5' -54.8 NC_005259.1 + 14734 0.68 0.714503
Target:  5'- gUCGCCGagaUGUACGCGCUGGCcgggccgguGAUCc -3'
miRNA:   3'- -GGCGGCaa-GCGUGCGUGACUG---------CUAGa -5'
23324 5' -54.8 NC_005259.1 + 14796 0.72 0.482605
Target:  5'- uCCGCUGUUC-CACGCcggGCUGAUGAc-- -3'
miRNA:   3'- -GGCGGCAAGcGUGCG---UGACUGCUaga -5'
23324 5' -54.8 NC_005259.1 + 20112 0.67 0.765616
Target:  5'- gCCGCCGUcUCaagGC-CGCACUGGCugccGUCg -3'
miRNA:   3'- -GGCGGCA-AG---CGuGCGUGACUGc---UAGa -5'
23324 5' -54.8 NC_005259.1 + 20198 0.68 0.714503
Target:  5'- aUCGCCGgUUGCAagacCGaACUGugGAUCUu -3'
miRNA:   3'- -GGCGGCaAGCGU----GCgUGACugCUAGA- -5'
23324 5' -54.8 NC_005259.1 + 24351 0.67 0.745489
Target:  5'- aCCGCCGggUGCuCGCACaccgaGGUCUg -3'
miRNA:   3'- -GGCGGCaaGCGuGCGUGacug-CUAGA- -5'
23324 5' -54.8 NC_005259.1 + 27288 0.71 0.52321
Target:  5'- gCCGCCGc-UGCACGCGCcgGAcaCGGUCa -3'
miRNA:   3'- -GGCGGCaaGCGUGCGUGa-CU--GCUAGa -5'
23324 5' -54.8 NC_005259.1 + 28017 0.68 0.711361
Target:  5'- gUCGCCGgggUUGCGCGCGUUGGCcagccacggcuuggGAUCg -3'
miRNA:   3'- -GGCGGCa--AGCGUGCGUGACUG--------------CUAGa -5'
23324 5' -54.8 NC_005259.1 + 28590 0.68 0.704005
Target:  5'- aCGCCGccaUCGCGC-UGCUGACGAa-- -3'
miRNA:   3'- gGCGGCa--AGCGUGcGUGACUGCUaga -5'
23324 5' -54.8 NC_005259.1 + 30718 0.67 0.775488
Target:  5'- gCCGCCGacgCGC-CGCACgaGCGAUa- -3'
miRNA:   3'- -GGCGGCaa-GCGuGCGUGacUGCUAga -5'
23324 5' -54.8 NC_005259.1 + 31836 0.66 0.794798
Target:  5'- gCGUCGaucuucUCGCGCGUgaccgcgucAUUGGCGAUCUu -3'
miRNA:   3'- gGCGGCa-----AGCGUGCG---------UGACUGCUAGA- -5'
23324 5' -54.8 NC_005259.1 + 32366 0.67 0.745489
Target:  5'- aCCGCCGUguaggGCGgGCACUGcccgccgucGCGAUa- -3'
miRNA:   3'- -GGCGGCAag---CGUgCGUGAC---------UGCUAga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.