Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23324 | 5' | -54.8 | NC_005259.1 | + | 55904 | 0.66 | 0.822523 |
Target: 5'- gCGCCGgggUCGCugGC-CaGACcgcuGGUCUg -3' miRNA: 3'- gGCGGCa--AGCGugCGuGaCUG----CUAGA- -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 28590 | 0.68 | 0.704005 |
Target: 5'- aCGCCGccaUCGCGC-UGCUGACGAa-- -3' miRNA: 3'- gGCGGCa--AGCGUGcGUGACUGCUaga -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 28017 | 0.68 | 0.711361 |
Target: 5'- gUCGCCGgggUUGCGCGCGUUGGCcagccacggcuuggGAUCg -3' miRNA: 3'- -GGCGGCa--AGCGUGCGUGACUG--------------CUAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 14734 | 0.68 | 0.714503 |
Target: 5'- gUCGCCGagaUGUACGCGCUGGCcgggccgguGAUCc -3' miRNA: 3'- -GGCGGCaa-GCGUGCGUGACUG---------CUAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 43890 | 0.68 | 0.714503 |
Target: 5'- gCCGCCGacaUUGCcCGCGCcGGCuGAUCg -3' miRNA: 3'- -GGCGGCa--AGCGuGCGUGaCUG-CUAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 20198 | 0.68 | 0.714503 |
Target: 5'- aUCGCCGgUUGCAagacCGaACUGugGAUCUu -3' miRNA: 3'- -GGCGGCaAGCGU----GCgUGACugCUAGA- -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 12807 | 0.68 | 0.735255 |
Target: 5'- aCGCUG-UCGCGCGCAC--GCGcgCg -3' miRNA: 3'- gGCGGCaAGCGUGCGUGacUGCuaGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 6354 | 0.68 | 0.736283 |
Target: 5'- gUGCCGUaCGUGCGCACguugucgccgggcgcGAUGGUCa -3' miRNA: 3'- gGCGGCAaGCGUGCGUGa--------------CUGCUAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 32366 | 0.67 | 0.745489 |
Target: 5'- aCCGCCGUguaggGCGgGCACUGcccgccgucGCGAUa- -3' miRNA: 3'- -GGCGGCAag---CGUgCGUGAC---------UGCUAga -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 1500 | 0.68 | 0.682819 |
Target: 5'- -gGCaguGUUCGcCACGCucacgcugucACUGACGAUCa -3' miRNA: 3'- ggCGg--CAAGC-GUGCG----------UGACUGCUAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 1890 | 0.69 | 0.661448 |
Target: 5'- gCCGCCGagaUCGCGCGaGCUGcCGAg-- -3' miRNA: 3'- -GGCGGCa--AGCGUGCgUGACuGCUaga -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 47562 | 0.69 | 0.660376 |
Target: 5'- gCGuuGUUCGCGCGCuGCUGucccucgGCGGUg- -3' miRNA: 3'- gGCggCAAGCGUGCG-UGAC-------UGCUAga -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 9667 | 0.72 | 0.47269 |
Target: 5'- cCCGuuGUUCcaCAUGCGCUGcCGGUCg -3' miRNA: 3'- -GGCggCAAGc-GUGCGUGACuGCUAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 14796 | 0.72 | 0.482605 |
Target: 5'- uCCGCUGUUC-CACGCcggGCUGAUGAc-- -3' miRNA: 3'- -GGCGGCAAGcGUGCG---UGACUGCUaga -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 27288 | 0.71 | 0.52321 |
Target: 5'- gCCGCCGc-UGCACGCGCcgGAcaCGGUCa -3' miRNA: 3'- -GGCGGCaaGCGUGCGUGa-CU--GCUAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 43842 | 0.71 | 0.544004 |
Target: 5'- gCCGCCGcUCGCcaugccgaGCGCACccgUGACGAc-- -3' miRNA: 3'- -GGCGGCaAGCG--------UGCGUG---ACUGCUaga -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 2532 | 0.71 | 0.554502 |
Target: 5'- aCGCCac-CGCGCGCAUUGGacaGAUCg -3' miRNA: 3'- gGCGGcaaGCGUGCGUGACUg--CUAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 9825 | 0.7 | 0.597012 |
Target: 5'- aCCGCCGggUGCG-GCGCUGGCccaAUCg -3' miRNA: 3'- -GGCGGCaaGCGUgCGUGACUGc--UAGa -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 37172 | 0.7 | 0.597012 |
Target: 5'- cCCGCCGa-CGC-CGCGCgagGACGAgCUg -3' miRNA: 3'- -GGCGGCaaGCGuGCGUGa--CUGCUaGA- -5' |
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23324 | 5' | -54.8 | NC_005259.1 | + | 57813 | 0.69 | 0.639973 |
Target: 5'- aCGCCGccCGCACGCA-UGGCcaGAUCg -3' miRNA: 3'- gGCGGCaaGCGUGCGUgACUG--CUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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