miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 11439 0.68 0.301571
Target:  5'- -uGCUugGGCCGCUCGcuGCCGCCGgUGCCu -3'
miRNA:   3'- cuCGG--CUGGCGGGC--UGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 18666 0.68 0.301571
Target:  5'- -uGCCG-CCGCCCGAgUA-CGUCAUCg -3'
miRNA:   3'- cuCGGCuGGCGGGCUgGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 32793 0.68 0.301571
Target:  5'- cGAGUCGuagcCCGaggucgauCCCGACgCACCGCCGUCg -3'
miRNA:   3'- -CUCGGCu---GGC--------GGGCUG-GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 42516 0.68 0.301571
Target:  5'- uGGCCagcaGCCGUCCGGCC-CCGaugggCACCg -3'
miRNA:   3'- cUCGGc---UGGCGGGCUGGuGGCg----GUGG- -5'
23325 5' -63.2 NC_005259.1 + 14014 0.68 0.301571
Target:  5'- uGAGUCG-CUGCCCGACgGCaCGaUCAUCg -3'
miRNA:   3'- -CUCGGCuGGCGGGCUGgUG-GC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35045 0.68 0.294674
Target:  5'- uAGCCGGaugaugUCGCCgGACaCGCCGCCcuuGCUg -3'
miRNA:   3'- cUCGGCU------GGCGGgCUG-GUGGCGG---UGG- -5'
23325 5' -63.2 NC_005259.1 + 28851 0.68 0.294674
Target:  5'- aAGUCGACCGCCCcACCGagggaCGUUggGCCg -3'
miRNA:   3'- cUCGGCUGGCGGGcUGGUg----GCGG--UGG- -5'
23325 5' -63.2 NC_005259.1 + 24098 0.68 0.294674
Target:  5'- aGGGCCaacgaACCGaugggaCCGggcggggacuacACCGCCGCCGCCc -3'
miRNA:   3'- -CUCGGc----UGGCg-----GGC------------UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 38641 0.68 0.294674
Target:  5'- -cGCCGAguuggcgaacUCGCCgaaauCGACCACCucgcuguugGCCGCCg -3'
miRNA:   3'- cuCGGCU----------GGCGG-----GCUGGUGG---------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7626 0.68 0.292628
Target:  5'- aGGGCCgGACCuacaccgucgccgaGUUCGACCGCCGUCGUCg -3'
miRNA:   3'- -CUCGG-CUGG--------------CGGGCUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 24800 0.68 0.2879
Target:  5'- aGGGCCaaGACCGaggugcCCCGGCaCGCCGUgcccgCACCg -3'
miRNA:   3'- -CUCGG--CUGGC------GGGCUG-GUGGCG-----GUGG- -5'
23325 5' -63.2 NC_005259.1 + 44085 0.68 0.2879
Target:  5'- uGGCUGACCuGCUCGAUCACguCGaCCAUCu -3'
miRNA:   3'- cUCGGCUGG-CGGGCUGGUG--GC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 47016 0.68 0.2879
Target:  5'- aAGCCGACCa--CGACCGCCuCCAgCa -3'
miRNA:   3'- cUCGGCUGGcggGCUGGUGGcGGUgG- -5'
23325 5' -63.2 NC_005259.1 + 20455 0.68 0.2879
Target:  5'- cGAGCCGGggUgGCUCggauGACCGCCGUCgACCu -3'
miRNA:   3'- -CUCGGCU--GgCGGG----CUGGUGGCGG-UGG- -5'
23325 5' -63.2 NC_005259.1 + 35713 0.68 0.2879
Target:  5'- -cGCUGAcgagguauCCGCCCGACgACCcggcGCUGCCc -3'
miRNA:   3'- cuCGGCU--------GGCGGGCUGgUGG----CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 25165 0.68 0.2879
Target:  5'- aAGCCcguuggGUCCGACCcguacGCCGCCGCCg -3'
miRNA:   3'- cUCGGcugg--CGGGCUGG-----UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 28133 0.68 0.287229
Target:  5'- -uGCCGacguaggcgaugaGCUGCCCGGCCucgACgCGCUGCCc -3'
miRNA:   3'- cuCGGC-------------UGGCGGGCUGG---UG-GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 47809 0.68 0.28125
Target:  5'- uGAGUCgcgaGACCuCgCgGGCCACCGCUGCCg -3'
miRNA:   3'- -CUCGG----CUGGcG-GgCUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7718 0.69 0.274721
Target:  5'- uGGGCCGAgggauaccucacCCGCCuCGAggaCGCgGUCACCg -3'
miRNA:   3'- -CUCGGCU------------GGCGG-GCUg--GUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 63201 0.69 0.274721
Target:  5'- cGGUCGugCGCCuCGACCGCCucGUCAg- -3'
miRNA:   3'- cUCGGCugGCGG-GCUGGUGG--CGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.