miRNA display CGI


Results 61 - 80 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 23223 0.67 0.330399
Target:  5'- cGGGuaCCGuCCGCUCGacGCCAauGCCACCu -3'
miRNA:   3'- -CUC--GGCuGGCGGGC--UGGUggCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 52938 0.67 0.330399
Target:  5'- uGGUCGcucaaCGCCCGuaagcacCCGCCGCUGCCc -3'
miRNA:   3'- cUCGGCug---GCGGGCu------GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 17708 0.67 0.330399
Target:  5'- cGGUcgCGACUaCCCGAUCACCGaCgCACCg -3'
miRNA:   3'- cUCG--GCUGGcGGGCUGGUGGC-G-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 37233 0.67 0.330399
Target:  5'- -cGCUGGCCcguGCCgGAuUgGCUGCCGCCg -3'
miRNA:   3'- cuCGGCUGG---CGGgCU-GgUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15278 0.68 0.325948
Target:  5'- -cGCCGACgaGCaagcgaucuacaccgCCGACC-UCGCCGCCc -3'
miRNA:   3'- cuCGGCUGg-CG---------------GGCUGGuGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 39902 0.68 0.323005
Target:  5'- -cGCCG-CCGCCCG-CCucgauCCGUCgaggGCCg -3'
miRNA:   3'- cuCGGCuGGCGGGCuGGu----GGCGG----UGG- -5'
23325 5' -63.2 NC_005259.1 + 9501 0.68 0.323005
Target:  5'- cGAGgaaCGugCGCUcgucgcgcgcguCGACCGCCGCCgggucACCg -3'
miRNA:   3'- -CUCg--GCugGCGG------------GCUGGUGGCGG-----UGG- -5'
23325 5' -63.2 NC_005259.1 + 24862 0.68 0.323005
Target:  5'- -cGCCGAggcCCGCCUcGCUcugACCGCUAUCg -3'
miRNA:   3'- cuCGGCU---GGCGGGcUGG---UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 66846 0.68 0.315736
Target:  5'- -uGCCGcCCGCaCgGGCCACCGauCgGCCu -3'
miRNA:   3'- cuCGGCuGGCG-GgCUGGUGGC--GgUGG- -5'
23325 5' -63.2 NC_005259.1 + 37568 0.68 0.315736
Target:  5'- -uGUCGACUGCUCG-CCGCC-CgCGCCg -3'
miRNA:   3'- cuCGGCUGGCGGGCuGGUGGcG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 33555 0.68 0.315736
Target:  5'- -cGCCGgucaggaagaACCGCCCGAacuugaCCGCgucgcggGCCACCg -3'
miRNA:   3'- cuCGGC----------UGGCGGGCU------GGUGg------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45513 0.68 0.315736
Target:  5'- uGGCC-ACCGCgCCGguguugGCCGCCGUgGCUg -3'
miRNA:   3'- cUCGGcUGGCG-GGC------UGGUGGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 1357 0.68 0.315736
Target:  5'- -uGCCuacugGGCCGCUCG-CCG-CGCCGCCc -3'
miRNA:   3'- cuCGG-----CUGGCGGGCuGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37036 0.68 0.315736
Target:  5'- -uGUCGAUCuugguGCCCG-CCACCGcCCACg -3'
miRNA:   3'- cuCGGCUGG-----CGGGCuGGUGGC-GGUGg -5'
23325 5' -63.2 NC_005259.1 + 44431 0.68 0.311434
Target:  5'- -cGCCGAuaCCgGCCCcgaagauguucuugaGACCggggauGCCGCCGCCc -3'
miRNA:   3'- cuCGGCU--GG-CGGG---------------CUGG------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 33660 0.68 0.308592
Target:  5'- cAGCCGAgggUGCCCGGCCcACCcuguGCgACCa -3'
miRNA:   3'- cUCGGCUg--GCGGGCUGG-UGG----CGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 11909 0.68 0.308592
Target:  5'- -cGCgGAUacgguugaGCUCGAaCACCGCCGCCu -3'
miRNA:   3'- cuCGgCUGg-------CGGGCUgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 48509 0.68 0.307884
Target:  5'- aGGGCCGcgacuuGCCGCacugCCGACUucucggcGCUGUCGCCg -3'
miRNA:   3'- -CUCGGC------UGGCG----GGCUGG-------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 13122 0.68 0.304364
Target:  5'- cGGCuaCGACCagcgcacgguguucgGCUCGAUCAUgGCCACCa -3'
miRNA:   3'- cUCG--GCUGG---------------CGGGCUGGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 42516 0.68 0.301571
Target:  5'- uGGCCagcaGCCGUCCGGCC-CCGaugggCACCg -3'
miRNA:   3'- cUCGGc---UGGCGGGCUGGuGGCg----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.