miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 12218 0.67 0.368409
Target:  5'- -cGgCGcACCGCCCGcugGCCgggcaauggucacACCGCCugCg -3'
miRNA:   3'- cuCgGC-UGGCGGGC---UGG-------------UGGCGGugG- -5'
23325 5' -63.2 NC_005259.1 + 25948 0.67 0.361207
Target:  5'- -cGCCGgu-GCCCGGcCCGCCGaCGCCu -3'
miRNA:   3'- cuCGGCuggCGGGCU-GGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 17743 0.67 0.361207
Target:  5'- -uGCuCGACgCGaUCCGugagGCCGCCGCgCGCCg -3'
miRNA:   3'- cuCG-GCUG-GC-GGGC----UGGUGGCG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 26503 0.67 0.358038
Target:  5'- cGAGCUcGCCGCCCGGCgagaagagCGCggugagcagcuugGCCACCa -3'
miRNA:   3'- -CUCGGcUGGCGGGCUG--------GUGg------------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 31566 0.67 0.35332
Target:  5'- -cGCUGcACCgcGCCUGAUCGUCGCCAUCa -3'
miRNA:   3'- cuCGGC-UGG--CGGGCUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 40689 0.67 0.35332
Target:  5'- -uGCUcACCgGCCCGAUgAucggggugcCCGCCACCa -3'
miRNA:   3'- cuCGGcUGG-CGGGCUGgU---------GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45149 0.67 0.35332
Target:  5'- -uGCUGAUCGCUCaGGCCGCCcuuggccuuguuGCgCGCCg -3'
miRNA:   3'- cuCGGCUGGCGGG-CUGGUGG------------CG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 7308 0.67 0.35332
Target:  5'- --aUUGGgUGCCCGAguucaCCGCCGUCGCCg -3'
miRNA:   3'- cucGGCUgGCGGGCU-----GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45709 0.67 0.345556
Target:  5'- cGAGuuGAUCGCguaGAUCGCCuGCgCACCa -3'
miRNA:   3'- -CUCggCUGGCGgg-CUGGUGG-CG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 7176 0.67 0.345556
Target:  5'- aGGGCaccggCGAgUGCCCGGCCugCGgacgCACCg -3'
miRNA:   3'- -CUCG-----GCUgGCGGGCUGGugGCg---GUGG- -5'
23325 5' -63.2 NC_005259.1 + 58815 0.67 0.345556
Target:  5'- cGGGCuCGcGCUGCUCGGCacccUCGCCGCCc -3'
miRNA:   3'- -CUCG-GC-UGGCGGGCUGgu--GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 52027 0.67 0.345556
Target:  5'- aGGCCG-CCGCaCUG-CgCGCUGUCGCCg -3'
miRNA:   3'- cUCGGCuGGCG-GGCuG-GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 36848 0.67 0.344787
Target:  5'- -uGCUGacGCCGCCCGcugcgccguugcuGgCACCGCCcgcGCCg -3'
miRNA:   3'- cuCGGC--UGGCGGGC-------------UgGUGGCGG---UGG- -5'
23325 5' -63.2 NC_005259.1 + 65467 0.67 0.344787
Target:  5'- aGGCCGACUccgcguGUCUGGCUgccauagGCUGCCACUa -3'
miRNA:   3'- cUCGGCUGG------CGGGCUGG-------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 62400 0.67 0.337916
Target:  5'- -cGCCcGCCuGCUCGACCACgG-CACCc -3'
miRNA:   3'- cuCGGcUGG-CGGGCUGGUGgCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15790 0.67 0.337916
Target:  5'- -uGCUGGCCGCCgggauCGACCGCCcgaCAUCc -3'
miRNA:   3'- cuCGGCUGGCGG-----GCUGGUGGcg-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 31810 0.67 0.337916
Target:  5'- cGAGCuCGACCGaCCCcACCGCgC-CCGCg -3'
miRNA:   3'- -CUCG-GCUGGC-GGGcUGGUG-GcGGUGg -5'
23325 5' -63.2 NC_005259.1 + 50094 0.67 0.337159
Target:  5'- -cGCCGAUggugCGCCCGagguuGCCcguacgcacgggcACCGCCACa -3'
miRNA:   3'- cuCGGCUG----GCGGGC-----UGG-------------UGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 3677 0.67 0.330399
Target:  5'- uGAGCCaGAUCGUC--ACCGCCGCCcagcuugagACCg -3'
miRNA:   3'- -CUCGG-CUGGCGGgcUGGUGGCGG---------UGG- -5'
23325 5' -63.2 NC_005259.1 + 37233 0.67 0.330399
Target:  5'- -cGCUGGCCcguGCCgGAuUgGCUGCCGCCg -3'
miRNA:   3'- cuCGGCUGG---CGGgCU-GgUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.