miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 13122 0.68 0.304364
Target:  5'- cGGCuaCGACCagcgcacgguguucgGCUCGAUCAUgGCCACCa -3'
miRNA:   3'- cUCG--GCUGG---------------CGGGCUGGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 13169 0.73 0.144501
Target:  5'- -cGCCcgaGACCGCCCGGCaGCuCGCCAUg -3'
miRNA:   3'- cuCGG---CUGGCGGGCUGgUG-GCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 13406 0.69 0.274721
Target:  5'- -cGCuCGGCCuuCCUGGCCGgggUCGCCGCCg -3'
miRNA:   3'- cuCG-GCUGGc-GGGCUGGU---GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 13564 0.71 0.18478
Target:  5'- -cGCCGAccCCGCCCcgacacccgaggacGACCccacguucgauuGCCGCUACCa -3'
miRNA:   3'- cuCGGCU--GGCGGG--------------CUGG------------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 14014 0.68 0.301571
Target:  5'- uGAGUCG-CUGCCCGACgGCaCGaUCAUCg -3'
miRNA:   3'- -CUCGGCuGGCGGGCUGgUG-GC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 14329 0.76 0.090108
Target:  5'- -cGCCG-CCGCCCGcgugcggGCCGCCGaCGCCa -3'
miRNA:   3'- cuCGGCuGGCGGGC-------UGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 14675 0.73 0.14674
Target:  5'- cGGGCCGcgugcacucgauuCUGCUCGACCcCCGCCGCg -3'
miRNA:   3'- -CUCGGCu------------GGCGGGCUGGuGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 14867 0.71 0.181568
Target:  5'- cGAGguUCGcGCUGCCCGA--GCCGCCGCCg -3'
miRNA:   3'- -CUC--GGC-UGGCGGGCUggUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 14903 0.66 0.402443
Target:  5'- aAGCCaagacccucACCGCaCUGGCCAuCCGCUAUCu -3'
miRNA:   3'- cUCGGc--------UGGCG-GGCUGGU-GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15278 0.68 0.325948
Target:  5'- -cGCCGACgaGCaagcgaucuacaccgCCGACC-UCGCCGCCc -3'
miRNA:   3'- cuCGGCUGg-CG---------------GGCUGGuGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15500 0.66 0.419753
Target:  5'- cGAGaaGACC-CUCGGCUACC-UCACCa -3'
miRNA:   3'- -CUCggCUGGcGGGCUGGUGGcGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15538 0.72 0.168359
Target:  5'- aGGCCG-CCGUcaCUGGCCGgUGCCACCc -3'
miRNA:   3'- cUCGGCuGGCG--GGCUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15790 0.67 0.337916
Target:  5'- -uGCUGGCCGCCgggauCGACCGCCcgaCAUCc -3'
miRNA:   3'- cuCGGCUGGCGG-----GCUGGUGGcg-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 15969 0.71 0.205117
Target:  5'- aAGUCG-CCGCCCaguucggucgaguGAUCACCGCCggugGCCg -3'
miRNA:   3'- cUCGGCuGGCGGG-------------CUGGUGGCGG----UGG- -5'
23325 5' -63.2 NC_005259.1 + 17425 0.7 0.230705
Target:  5'- aGGCCGcACUGCCCGAggaCAUuggcauugacgaugUGCCACCg -3'
miRNA:   3'- cUCGGC-UGGCGGGCUg--GUG--------------GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 17708 0.67 0.330399
Target:  5'- cGGUcgCGACUaCCCGAUCACCGaCgCACCg -3'
miRNA:   3'- cUCG--GCUGGcGGGCUGGUGGC-G-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 17743 0.67 0.361207
Target:  5'- -uGCuCGACgCGaUCCGugagGCCGCCGCgCGCCg -3'
miRNA:   3'- cuCG-GCUG-GC-GGGC----UGGUGGCG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 17775 0.66 0.377344
Target:  5'- cGGGCCGAgCGCaCCGagcguGCgCACCGCgAUa -3'
miRNA:   3'- -CUCGGCUgGCG-GGC-----UG-GUGGCGgUGg -5'
23325 5' -63.2 NC_005259.1 + 17876 0.66 0.419753
Target:  5'- uGAGCCgcucgguugGACC-CCCG--CACCGCgCGCCg -3'
miRNA:   3'- -CUCGG---------CUGGcGGGCugGUGGCG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 18277 0.69 0.268315
Target:  5'- uGAGaCGACCucgacGCCCGACgaGCCGCCguucuGCCc -3'
miRNA:   3'- -CUCgGCUGG-----CGGGCUGg-UGGCGG-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.