Results 41 - 60 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23325 | 5' | -63.2 | NC_005259.1 | + | 1829 | 0.82 | 0.028293 |
Target: 5'- -cGCCGACCuGCUCG-CCGCUGCCGCCg -3' miRNA: 3'- cuCGGCUGG-CGGGCuGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 67748 | 0.84 | 0.021509 |
Target: 5'- cGGCCacuaGGCCGcCCCGGCCACCGgCCACCg -3' miRNA: 3'- cUCGG----CUGGC-GGGCUGGUGGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 25904 | 0.85 | 0.019271 |
Target: 5'- cGAGgaUGGCCGCCUGAgCCGCCGCCGCCg -3' miRNA: 3'- -CUCg-GCUGGCGGGCU-GGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 48123 | 0.87 | 0.01275 |
Target: 5'- cGAGCacACCGCCuCGACCACCGCCGCCc -3' miRNA: 3'- -CUCGgcUGGCGG-GCUGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 36657 | 0.9 | 0.007543 |
Target: 5'- cGAGCCG-CCGCCCucGCCGCCGCCGCCg -3' miRNA: 3'- -CUCGGCuGGCGGGc-UGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 26098 | 0.79 | 0.054346 |
Target: 5'- cGAGaaGACC-CCCGAgcagaCCGCCGCCGCCg -3' miRNA: 3'- -CUCggCUGGcGGGCU-----GGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 39970 | 0.78 | 0.056896 |
Target: 5'- uGAG-CGACUGCUCGACCACCucgacgggcugaucGCCGCCg -3' miRNA: 3'- -CUCgGCUGGCGGGCUGGUGG--------------CGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 14329 | 0.76 | 0.090108 |
Target: 5'- -cGCCG-CCGCCCGcgugcggGCCGCCGaCGCCa -3' miRNA: 3'- cuCGGCuGGCGGGC-------UGGUGGCgGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 8824 | 0.76 | 0.085683 |
Target: 5'- cGGGCCGgugaguugacgcGCUGCgCCGACCAccacagcgugcCCGCCGCCu -3' miRNA: 3'- -CUCGGC------------UGGCG-GGCUGGU-----------GGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 5417 | 0.76 | 0.085455 |
Target: 5'- -cGCUGGCCGCCacgucgaggucugCGcCCGCUGCCGCCg -3' miRNA: 3'- cuCGGCUGGCGG-------------GCuGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 22615 | 0.76 | 0.083437 |
Target: 5'- -cGCCGaccGCCGCCCGAUCAucuUCGCCGCg -3' miRNA: 3'- cuCGGC---UGGCGGGCUGGU---GGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 48164 | 0.76 | 0.083437 |
Target: 5'- -cGCCcgaaACCGCCC--CCGCCGCCGCCg -3' miRNA: 3'- cuCGGc---UGGCGGGcuGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 6217 | 0.76 | 0.083437 |
Target: 5'- uGAGCCG-CCGCgCCGA-CACCGUgACCg -3' miRNA: 3'- -CUCGGCuGGCG-GGCUgGUGGCGgUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 48399 | 0.76 | 0.083216 |
Target: 5'- -cGCCGA-CGCCCGccgucgagucaccGCgACCGCCACCa -3' miRNA: 3'- cuCGGCUgGCGGGC-------------UGgUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 56272 | 0.77 | 0.077034 |
Target: 5'- -cGCCG-CCGCCCGGCCcguAUCGgCACCa -3' miRNA: 3'- cuCGGCuGGCGGGCUGG---UGGCgGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 13017 | 0.77 | 0.075006 |
Target: 5'- -cGCCG-CCGCCCGGCC-CCaGCaCGCCa -3' miRNA: 3'- cuCGGCuGGCGGGCUGGuGG-CG-GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 23890 | 0.77 | 0.07303 |
Target: 5'- -cGCUG-CCGCCCGAgCCGCCGCgccCGCCg -3' miRNA: 3'- cuCGGCuGGCGGGCU-GGUGGCG---GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 35835 | 0.77 | 0.067396 |
Target: 5'- uAGCCGccACCGCCCGcgagcacagguCCGCCGCCGCg -3' miRNA: 3'- cUCGGC--UGGCGGGCu----------GGUGGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 35518 | 0.78 | 0.060532 |
Target: 5'- -cGCCG-CCGCCgGGCaCACCGcCCGCCg -3' miRNA: 3'- cuCGGCuGGCGGgCUG-GUGGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 45327 | 0.78 | 0.058924 |
Target: 5'- -cGCCGaACUGCgUGGCCugCGCCGCCu -3' miRNA: 3'- cuCGGC-UGGCGgGCUGGugGCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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