Results 41 - 60 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23325 | 5' | -63.2 | NC_005259.1 | + | 10542 | 0.67 | 0.369215 |
Target: 5'- gGGGUCGAUCuucuggauguGCUCGAUCAaucgCGCCGCCu -3' miRNA: 3'- -CUCGGCUGG----------CGGGCUGGUg---GCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 18409 | 0.67 | 0.369215 |
Target: 5'- -cGCCGA--GCCCG-CgC-CCGCCACCu -3' miRNA: 3'- cuCGGCUggCGGGCuG-GuGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 12218 | 0.67 | 0.368409 |
Target: 5'- -cGgCGcACCGCCCGcugGCCgggcaauggucacACCGCCugCg -3' miRNA: 3'- cuCgGC-UGGCGGGC---UGG-------------UGGCGGugG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 22834 | 0.67 | 0.369215 |
Target: 5'- -cGUCGugCugGCCCGGCCcacCCGCaGCCg -3' miRNA: 3'- cuCGGCugG--CGGGCUGGu--GGCGgUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 50094 | 0.67 | 0.337159 |
Target: 5'- -cGCCGAUggugCGCCCGagguuGCCcguacgcacgggcACCGCCACa -3' miRNA: 3'- cuCGGCUG----GCGGGC-----UGG-------------UGGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 31566 | 0.67 | 0.35332 |
Target: 5'- -cGCUGcACCgcGCCUGAUCGUCGCCAUCa -3' miRNA: 3'- cuCGGC-UGG--CGGGCUGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 23223 | 0.67 | 0.330399 |
Target: 5'- cGGGuaCCGuCCGCUCGacGCCAauGCCACCu -3' miRNA: 3'- -CUC--GGCuGGCGGGC--UGGUggCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 17743 | 0.67 | 0.361207 |
Target: 5'- -uGCuCGACgCGaUCCGugagGCCGCCGCgCGCCg -3' miRNA: 3'- cuCG-GCUG-GC-GGGC----UGGUGGCG-GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 7308 | 0.67 | 0.35332 |
Target: 5'- --aUUGGgUGCCCGAguucaCCGCCGUCGCCg -3' miRNA: 3'- cucGGCUgGCGGGCU-----GGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 45709 | 0.67 | 0.345556 |
Target: 5'- cGAGuuGAUCGCguaGAUCGCCuGCgCACCa -3' miRNA: 3'- -CUCggCUGGCGgg-CUGGUGG-CG-GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 52938 | 0.67 | 0.330399 |
Target: 5'- uGGUCGcucaaCGCCCGuaagcacCCGCCGCUGCCc -3' miRNA: 3'- cUCGGCug---GCGGGCu------GGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 17708 | 0.67 | 0.330399 |
Target: 5'- cGGUcgCGACUaCCCGAUCACCGaCgCACCg -3' miRNA: 3'- cUCG--GCUGGcGGGCUGGUGGC-G-GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 3677 | 0.67 | 0.330399 |
Target: 5'- uGAGCCaGAUCGUC--ACCGCCGCCcagcuugagACCg -3' miRNA: 3'- -CUCGG-CUGGCGGgcUGGUGGCGG---------UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 15790 | 0.67 | 0.337916 |
Target: 5'- -uGCUGGCCGCCgggauCGACCGCCcgaCAUCc -3' miRNA: 3'- cuCGGCUGGCGG-----GCUGGUGGcg-GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 36848 | 0.67 | 0.344787 |
Target: 5'- -uGCUGacGCCGCCCGcugcgccguugcuGgCACCGCCcgcGCCg -3' miRNA: 3'- cuCGGC--UGGCGGGC-------------UgGUGGCGG---UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 31810 | 0.67 | 0.337916 |
Target: 5'- cGAGCuCGACCGaCCCcACCGCgC-CCGCg -3' miRNA: 3'- -CUCG-GCUGGC-GGGcUGGUG-GcGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 65467 | 0.67 | 0.344787 |
Target: 5'- aGGCCGACUccgcguGUCUGGCUgccauagGCUGCCACUa -3' miRNA: 3'- cUCGGCUGG------CGGGCUGG-------UGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 58815 | 0.67 | 0.345556 |
Target: 5'- cGGGCuCGcGCUGCUCGGCacccUCGCCGCCc -3' miRNA: 3'- -CUCG-GC-UGGCGGGCUGgu--GGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 7176 | 0.67 | 0.345556 |
Target: 5'- aGGGCaccggCGAgUGCCCGGCCugCGgacgCACCg -3' miRNA: 3'- -CUCG-----GCUgGCGGGCUGGugGCg---GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 62400 | 0.67 | 0.337916 |
Target: 5'- -cGCCcGCCuGCUCGACCACgG-CACCc -3' miRNA: 3'- cuCGGcUGG-CGGGCUGGUGgCgGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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