miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 56724 0.66 0.385592
Target:  5'- --cCCGAgCGCgUCGACguauCCGCCACCg -3'
miRNA:   3'- cucGGCUgGCG-GGCUGgu--GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 10657 0.66 0.376526
Target:  5'- cGGUCGAgCGCCUugaggauGGUCugCGCCGCCu -3'
miRNA:   3'- cUCGGCUgGCGGG-------CUGGugGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 58373 0.66 0.377344
Target:  5'- aAGUCGuagaGCUGCuCCGACggugcgCACCaGCCACCg -3'
miRNA:   3'- cUCGGC----UGGCG-GGCUG------GUGG-CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 29451 0.66 0.419753
Target:  5'- cAGCCaGcgugaccuuGCCGCCCGGCUcggcauggACCGCCGu- -3'
miRNA:   3'- cUCGG-C---------UGGCGGGCUGG--------UGGCGGUgg -5'
23325 5' -63.2 NC_005259.1 + 4360 0.66 0.419753
Target:  5'- -cGCCGGacggcaCGCCCGugCcCUGCuCAUCg -3'
miRNA:   3'- cuCGGCUg-----GCGGGCugGuGGCG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 44189 0.66 0.419753
Target:  5'- aAGUCGACCGCUCGcgucguauCCGCgACCc -3'
miRNA:   3'- cUCGGCUGGCGGGCuggu----GGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 15500 0.66 0.419753
Target:  5'- cGAGaaGACC-CUCGGCUACC-UCACCa -3'
miRNA:   3'- -CUCggCUGGcGGGCUGGUGGcGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 52458 0.66 0.419753
Target:  5'- cGGCgGAUgGCa-GACCACCGcCCGCg -3'
miRNA:   3'- cUCGgCUGgCGggCUGGUGGC-GGUGg -5'
23325 5' -63.2 NC_005259.1 + 28363 0.66 0.377344
Target:  5'- -uGCUGGCUGCCCcACCucggGCCGaaACCg -3'
miRNA:   3'- cuCGGCUGGCGGGcUGG----UGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 17775 0.66 0.377344
Target:  5'- cGGGCCGAgCGCaCCGagcguGCgCACCGCgAUa -3'
miRNA:   3'- -CUCGGCUgGCG-GGC-----UG-GUGGCGgUGg -5'
23325 5' -63.2 NC_005259.1 + 4416 0.66 0.385592
Target:  5'- aGGGCCGccACCGCgCGcCCGaggucgaGCCGCCc -3'
miRNA:   3'- -CUCGGC--UGGCGgGCuGGUgg-----CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 36782 0.66 0.411041
Target:  5'- -uGCCG-CCGuCCUGACCGCuCGCguCg -3'
miRNA:   3'- cuCGGCuGGC-GGGCUGGUG-GCGguGg -5'
23325 5' -63.2 NC_005259.1 + 26729 0.66 0.391437
Target:  5'- cGGGCCGACCugcuggcagaccugGCUCacguaauccuGACCGaugaUGCCGCCg -3'
miRNA:   3'- -CUCGGCUGG--------------CGGG----------CUGGUg---GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 58442 0.66 0.385592
Target:  5'- -cGCUGAUCggugGCCUugguGAUCGCgGCCACCa -3'
miRNA:   3'- cuCGGCUGG----CGGG----CUGGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 23425 0.66 0.419753
Target:  5'- uGGCgGcGCaagcaGCCCG-CCACCGCCAa- -3'
miRNA:   3'- cUCGgC-UGg----CGGGCuGGUGGCGGUgg -5'
23325 5' -63.2 NC_005259.1 + 34896 0.66 0.402443
Target:  5'- cGGGCaggacgGGCCGCUCGGgcaucaCACUGCUGCCu -3'
miRNA:   3'- -CUCGg-----CUGGCGGGCUg-----GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 44230 0.66 0.402443
Target:  5'- cGAGCU---CGCCCG-CCG-CGCCGCCc -3'
miRNA:   3'- -CUCGGcugGCGGGCuGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 3677 0.67 0.330399
Target:  5'- uGAGCCaGAUCGUC--ACCGCCGCCcagcuugagACCg -3'
miRNA:   3'- -CUCGG-CUGGCGGgcUGGUGGCGG---------UGG- -5'
23325 5' -63.2 NC_005259.1 + 52938 0.67 0.330399
Target:  5'- uGGUCGcucaaCGCCCGuaagcacCCGCCGCUGCCc -3'
miRNA:   3'- cUCGGCug---GCGGGCu------GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 23223 0.67 0.330399
Target:  5'- cGGGuaCCGuCCGCUCGacGCCAauGCCACCu -3'
miRNA:   3'- -CUC--GGCuGGCGGGC--UGGUggCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.