miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 13017 0.77 0.075006
Target:  5'- -cGCCG-CCGCCCGGCC-CCaGCaCGCCa -3'
miRNA:   3'- cuCGGCuGGCGGGCUGGuGG-CG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 56272 0.77 0.077034
Target:  5'- -cGCCG-CCGCCCGGCCcguAUCGgCACCa -3'
miRNA:   3'- cuCGGCuGGCGGGCUGG---UGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 48399 0.76 0.083216
Target:  5'- -cGCCGA-CGCCCGccgucgagucaccGCgACCGCCACCa -3'
miRNA:   3'- cuCGGCUgGCGGGC-------------UGgUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 6217 0.76 0.083437
Target:  5'- uGAGCCG-CCGCgCCGA-CACCGUgACCg -3'
miRNA:   3'- -CUCGGCuGGCG-GGCUgGUGGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 48164 0.76 0.083437
Target:  5'- -cGCCcgaaACCGCCC--CCGCCGCCGCCg -3'
miRNA:   3'- cuCGGc---UGGCGGGcuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 22615 0.76 0.083437
Target:  5'- -cGCCGaccGCCGCCCGAUCAucuUCGCCGCg -3'
miRNA:   3'- cuCGGC---UGGCGGGCUGGU---GGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 5417 0.76 0.085455
Target:  5'- -cGCUGGCCGCCacgucgaggucugCGcCCGCUGCCGCCg -3'
miRNA:   3'- cuCGGCUGGCGG-------------GCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 8824 0.76 0.085683
Target:  5'- cGGGCCGgugaguugacgcGCUGCgCCGACCAccacagcgugcCCGCCGCCu -3'
miRNA:   3'- -CUCGGC------------UGGCG-GGCUGGU-----------GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 14329 0.76 0.090108
Target:  5'- -cGCCG-CCGCCCGcgugcggGCCGCCGaCGCCa -3'
miRNA:   3'- cuCGGCuGGCGGGC-------UGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 59496 0.75 0.092035
Target:  5'- uAGCCGAgagugucaCCGCCCGgcgaauugcuguugGCCuuagcGCCGCCACCa -3'
miRNA:   3'- cUCGGCU--------GGCGGGC--------------UGG-----UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 6252 0.75 0.092768
Target:  5'- uGGGUCGAUauCCCGcACCGCCGCCGCg -3'
miRNA:   3'- -CUCGGCUGgcGGGC-UGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 36711 0.75 0.095251
Target:  5'- uGAGCuCGuGCCGCUCGAcCCGCCGCgccCGCCg -3'
miRNA:   3'- -CUCG-GC-UGGCGGGCU-GGUGGCG---GUGG- -5'
23325 5' -63.2 NC_005259.1 + 44650 0.75 0.103082
Target:  5'- -uGCCG-CCGCCCGACUcgaaCGCCACa -3'
miRNA:   3'- cuCGGCuGGCGGGCUGGug--GCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 66745 0.75 0.105824
Target:  5'- aGGCUGauGCUGCCCGGCCugccagucgACCGCCugCu -3'
miRNA:   3'- cUCGGC--UGGCGGGCUGG---------UGGCGGugG- -5'
23325 5' -63.2 NC_005259.1 + 29054 0.74 0.108067
Target:  5'- aGAGCCGcgagcgcgguauCgGCCCGAUCugCGCUGCCa -3'
miRNA:   3'- -CUCGGCu-----------GgCGGGCUGGugGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 20746 0.74 0.111516
Target:  5'- uGGuCCGGCCauCCCGACCACCGucccccgcCCACCg -3'
miRNA:   3'- cUC-GGCUGGc-GGGCUGGUGGC--------GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 53154 0.74 0.114468
Target:  5'- cAGCCGcuacGCCGaggCCGaucucGCCACCGCCGCCc -3'
miRNA:   3'- cUCGGC----UGGCg--GGC-----UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43658 0.74 0.117187
Target:  5'- -cGCCGACgGUgucguugCCGAUcaCACCGCCGCCg -3'
miRNA:   3'- cuCGGCUGgCG-------GGCUG--GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 22669 0.74 0.117493
Target:  5'- -cGCCGA-CGCaCUGACCGCCGCCgauuuccccGCCg -3'
miRNA:   3'- cuCGGCUgGCG-GGCUGGUGGCGG---------UGG- -5'
23325 5' -63.2 NC_005259.1 + 58694 0.74 0.117493
Target:  5'- gGGGUCGGCuCGUcgCCG-CCGCCGUCACCa -3'
miRNA:   3'- -CUCGGCUG-GCG--GGCuGGUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.