miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 7308 0.67 0.35332
Target:  5'- --aUUGGgUGCCCGAguucaCCGCCGUCGCCg -3'
miRNA:   3'- cucGGCUgGCGGGCU-----GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7570 0.79 0.054346
Target:  5'- -cGCC-ACCGUUCGcGCCGCCGCCGCCg -3'
miRNA:   3'- cuCGGcUGGCGGGC-UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7626 0.68 0.292628
Target:  5'- aGGGCCgGACCuacaccgucgccgaGUUCGACCGCCGUCGUCg -3'
miRNA:   3'- -CUCGG-CUGG--------------CGGGCUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7718 0.69 0.274721
Target:  5'- uGGGCCGAgggauaccucacCCGCCuCGAggaCGCgGUCACCg -3'
miRNA:   3'- -CUCGGCU------------GGCGG-GCUg--GUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7863 0.69 0.24982
Target:  5'- -cGCCGACCccggugGCCCGAgUGCUuggacucgggcaGCCGCCg -3'
miRNA:   3'- cuCGGCUGG------CGGGCUgGUGG------------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 8545 0.7 0.23239
Target:  5'- uGAGCuCGGCgguguagcccaUGCgCCGcAgCACCGCCACCg -3'
miRNA:   3'- -CUCG-GCUG-----------GCG-GGC-UgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 8824 0.76 0.085683
Target:  5'- cGGGCCGgugaguugacgcGCUGCgCCGACCAccacagcgugcCCGCCGCCu -3'
miRNA:   3'- -CUCGGC------------UGGCG-GGCUGGU-----------GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 9501 0.68 0.323005
Target:  5'- cGAGgaaCGugCGCUcgucgcgcgcguCGACCGCCGCCgggucACCg -3'
miRNA:   3'- -CUCg--GCugGCGG------------GCUGGUGGCGG-----UGG- -5'
23325 5' -63.2 NC_005259.1 + 9790 0.66 0.402443
Target:  5'- -uGCCcgGugUGCCCGcucgcgccACUACCGCCcgcACCg -3'
miRNA:   3'- cuCGG--CugGCGGGC--------UGGUGGCGG---UGG- -5'
23325 5' -63.2 NC_005259.1 + 9959 1 0.001353
Target:  5'- cGAGCCGACCGCCCGACCACCG-CACCg -3'
miRNA:   3'- -CUCGGCUGGCGGGCUGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 10542 0.67 0.369215
Target:  5'- gGGGUCGAUCuucuggauguGCUCGAUCAaucgCGCCGCCu -3'
miRNA:   3'- -CUCGGCUGG----------CGGGCUGGUg---GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 10657 0.66 0.376526
Target:  5'- cGGUCGAgCGCCUugaggauGGUCugCGCCGCCu -3'
miRNA:   3'- cUCGGCUgGCGGG-------CUGGugGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 11439 0.68 0.301571
Target:  5'- -uGCUugGGCCGCUCGcuGCCGCCGgUGCCu -3'
miRNA:   3'- cuCGG--CUGGCGGGC--UGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 11801 0.7 0.20972
Target:  5'- cGGGCgCGACCcgcuugaGCUCGucgcugucguacuGCCACCGCCGCa -3'
miRNA:   3'- -CUCG-GCUGG-------CGGGC-------------UGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 11850 0.66 0.414513
Target:  5'- --uCCGACCuGCCacccgucggcgaacgUGACCGCCG-CACCg -3'
miRNA:   3'- cucGGCUGG-CGG---------------GCUGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 11909 0.68 0.308592
Target:  5'- -cGCgGAUacgguugaGCUCGAaCACCGCCGCCu -3'
miRNA:   3'- cuCGgCUGg-------CGGGCUgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 12218 0.67 0.368409
Target:  5'- -cGgCGcACCGCCCGcugGCCgggcaauggucacACCGCCugCg -3'
miRNA:   3'- cuCgGC-UGGCGGGC---UGG-------------UGGCGGugG- -5'
23325 5' -63.2 NC_005259.1 + 12329 0.69 0.243893
Target:  5'- -cGCCG-CCaGCUC-ACgCACCGCCGCCu -3'
miRNA:   3'- cuCGGCuGG-CGGGcUG-GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 12508 0.71 0.190877
Target:  5'- uAGCCGcuggGCCGCUCGGCUACCcGUagaGCCg -3'
miRNA:   3'- cUCGGC----UGGCGGGCUGGUGG-CGg--UGG- -5'
23325 5' -63.2 NC_005259.1 + 13017 0.77 0.075006
Target:  5'- -cGCCG-CCGCCCGGCC-CCaGCaCGCCa -3'
miRNA:   3'- cuCGGCuGGCGGGCUGGuGG-CG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.