miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 56724 0.66 0.385592
Target:  5'- --cCCGAgCGCgUCGACguauCCGCCACCg -3'
miRNA:   3'- cucGGCUgGCG-GGCUGgu--GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 56272 0.77 0.077034
Target:  5'- -cGCCG-CCGCCCGGCCcguAUCGgCACCa -3'
miRNA:   3'- cuCGGCuGGCGGGCUGG---UGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 56102 0.71 0.195687
Target:  5'- gGGGCC-ACCGCgUGGCCACCGaaACUg -3'
miRNA:   3'- -CUCGGcUGGCGgGCUGGUGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 54858 0.71 0.195687
Target:  5'- aGGCCcGCUGCCCGAggauuCCGCacagcagGCCACCg -3'
miRNA:   3'- cUCGGcUGGCGGGCU-----GGUGg------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 54734 0.66 0.419753
Target:  5'- uAGCCGagGCUGCCgacagCGAUCagGCCGCCgACCc -3'
miRNA:   3'- cUCGGC--UGGCGG-----GCUGG--UGGCGG-UGG- -5'
23325 5' -63.2 NC_005259.1 + 53247 0.7 0.215996
Target:  5'- -cGCCG-CCGacaCCG-UCGCCGCCGCUg -3'
miRNA:   3'- cuCGGCuGGCg--GGCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 53154 0.74 0.114468
Target:  5'- cAGCCGcuacGCCGaggCCGaucucGCCACCGCCGCCc -3'
miRNA:   3'- cUCGGC----UGGCg--GGC-----UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 52938 0.67 0.330399
Target:  5'- uGGUCGcucaaCGCCCGuaagcacCCGCCGCUGCCc -3'
miRNA:   3'- cUCGGCug---GCGGGCu------GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 52571 0.7 0.210755
Target:  5'- uGGUCGACCGgaCCGGCCugAgCGUCGCCg -3'
miRNA:   3'- cUCGGCUGGCg-GGCUGG--UgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 52458 0.66 0.419753
Target:  5'- cGGCgGAUgGCa-GACCACCGcCCGCg -3'
miRNA:   3'- cUCGgCUGgCGggCUGGUGGC-GGUGg -5'
23325 5' -63.2 NC_005259.1 + 52233 0.66 0.411041
Target:  5'- -cGCUGAUCaCCC-ACUACCGCCcgGCCc -3'
miRNA:   3'- cuCGGCUGGcGGGcUGGUGGCGG--UGG- -5'
23325 5' -63.2 NC_005259.1 + 52027 0.67 0.345556
Target:  5'- aGGCCG-CCGCaCUG-CgCGCUGUCGCCg -3'
miRNA:   3'- cUCGGCuGGCG-GGCuG-GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 51970 0.66 0.377344
Target:  5'- aAGCCauGACCGCCaGAaucaUCACCGaCGCCg -3'
miRNA:   3'- cUCGG--CUGGCGGgCU----GGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 51715 0.73 0.143761
Target:  5'- -uGUCGACCggacaagGCCCacaugauGGCCACCGCCACg -3'
miRNA:   3'- cuCGGCUGG-------CGGG-------CUGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 50094 0.67 0.337159
Target:  5'- -cGCCGAUggugCGCCCGagguuGCCcguacgcacgggcACCGCCACa -3'
miRNA:   3'- cuCGGCUG----GCGGGC-----UGG-------------UGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 48913 0.69 0.24982
Target:  5'- cGAGCUG-CUggGCCUGACCGaCGCCACg -3'
miRNA:   3'- -CUCGGCuGG--CGGGCUGGUgGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 48509 0.68 0.307884
Target:  5'- aGGGCCGcgacuuGCCGCacugCCGACUucucggcGCUGUCGCCg -3'
miRNA:   3'- -CUCGGC------UGGCG----GGCUGG-------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 48399 0.76 0.083216
Target:  5'- -cGCCGA-CGCCCGccgucgagucaccGCgACCGCCACCa -3'
miRNA:   3'- cuCGGCUgGCGGGC-------------UGgUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 48164 0.76 0.083437
Target:  5'- -cGCCcgaaACCGCCC--CCGCCGCCGCCg -3'
miRNA:   3'- cuCGGc---UGGCGGGcuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 48123 0.87 0.01275
Target:  5'- cGAGCacACCGCCuCGACCACCGCCGCCc -3'
miRNA:   3'- -CUCGgcUGGCGG-GCUGGUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.