miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 68748 0.69 0.26203
Target:  5'- cGAGCuCGACC-CCggCGACC-UCGCCAUCg -3'
miRNA:   3'- -CUCG-GCUGGcGG--GCUGGuGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 67970 0.69 0.274721
Target:  5'- uAGCgCGcgcaGCgGCgUGGCCACCGCCGCg -3'
miRNA:   3'- cUCG-GC----UGgCGgGCUGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 67748 0.84 0.021509
Target:  5'- cGGCCacuaGGCCGcCCCGGCCACCGgCCACCg -3'
miRNA:   3'- cUCGG----CUGGC-GGGCUGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 66846 0.68 0.315736
Target:  5'- -uGCCGcCCGCaCgGGCCACCGauCgGCCu -3'
miRNA:   3'- cuCGGCuGGCG-GgCUGGUGGC--GgUGG- -5'
23325 5' -63.2 NC_005259.1 + 66745 0.75 0.105824
Target:  5'- aGGCUGauGCUGCCCGGCCugccagucgACCGCCugCu -3'
miRNA:   3'- cUCGGC--UGGCGGGCUGG---------UGGCGGugG- -5'
23325 5' -63.2 NC_005259.1 + 66257 0.71 0.195687
Target:  5'- cAGCgCGGCCcgcGCCgGGCggcggcucaCGCCGCCACCa -3'
miRNA:   3'- cUCG-GCUGG---CGGgCUG---------GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 65467 0.67 0.344787
Target:  5'- aGGCCGACUccgcguGUCUGGCUgccauagGCUGCCACUa -3'
miRNA:   3'- cUCGGCUGG------CGGGCUGG-------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 63201 0.69 0.274721
Target:  5'- cGGUCGugCGCCuCGACCGCCucGUCAg- -3'
miRNA:   3'- cUCGGCugGCGG-GCUGGUGG--CGGUgg -5'
23325 5' -63.2 NC_005259.1 + 62400 0.67 0.337916
Target:  5'- -cGCCcGCCuGCUCGACCACgG-CACCc -3'
miRNA:   3'- cuCGGcUGG-CGGGCUGGUGgCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 62131 0.71 0.200602
Target:  5'- cGAGgUGAUCGUCuCGACCACCucagGCCGCa -3'
miRNA:   3'- -CUCgGCUGGCGG-GCUGGUGG----CGGUGg -5'
23325 5' -63.2 NC_005259.1 + 60131 0.69 0.243893
Target:  5'- cGGCCucgucCUGCgCGGCCuugGCCGCCGCCu -3'
miRNA:   3'- cUCGGcu---GGCGgGCUGG---UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 59496 0.75 0.092035
Target:  5'- uAGCCGAgagugucaCCGCCCGgcgaauugcuguugGCCuuagcGCCGCCACCa -3'
miRNA:   3'- cUCGGCU--------GGCGGGC--------------UGG-----UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 58815 0.67 0.345556
Target:  5'- cGGGCuCGcGCUGCUCGGCacccUCGCCGCCc -3'
miRNA:   3'- -CUCG-GC-UGGCGGGCUGgu--GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 58694 0.74 0.117493
Target:  5'- gGGGUCGGCuCGUcgCCG-CCGCCGUCACCa -3'
miRNA:   3'- -CUCGGCUG-GCG--GGCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 58442 0.66 0.385592
Target:  5'- -cGCUGAUCggugGCCUugguGAUCGCgGCCACCa -3'
miRNA:   3'- cuCGGCUGG----CGGG----CUGGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 58373 0.66 0.377344
Target:  5'- aAGUCGuagaGCUGCuCCGACggugcgCACCaGCCACCg -3'
miRNA:   3'- cUCGGC----UGGCG-GGCUG------GUGG-CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 57703 0.66 0.402443
Target:  5'- -uGCCGGgcUUGCCCGACUcgcgggucuGCCaGUCACCc -3'
miRNA:   3'- cuCGGCU--GGCGGGCUGG---------UGG-CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 57667 0.71 0.190877
Target:  5'- -cGUCGACCGUguCCGGCCaaucgACCGUgGCCa -3'
miRNA:   3'- cuCGGCUGGCG--GGCUGG-----UGGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 56885 0.79 0.047473
Target:  5'- uGAGCCGACCGCCaaucgcagcgUGGCCGCCGCaGCa -3'
miRNA:   3'- -CUCGGCUGGCGG----------GCUGGUGGCGgUGg -5'
23325 5' -63.2 NC_005259.1 + 56764 0.71 0.200106
Target:  5'- uGGCCcaucgggGACCGCuuGAcaCCGCCGUUGCCg -3'
miRNA:   3'- cUCGG-------CUGGCGggCU--GGUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.