Results 1 - 20 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23325 | 5' | -63.2 | NC_005259.1 | + | 2779 | 0.65 | 0.425033 |
Target: 5'- cGAGCCGACgcaccucgacugguCGCacgucaaCCGgaucuccuagucACC-CCGCCACCa -3' miRNA: 3'- -CUCGGCUG--------------GCG-------GGC------------UGGuGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 7570 | 0.79 | 0.054346 |
Target: 5'- -cGCC-ACCGUUCGcGCCGCCGCCGCCg -3' miRNA: 3'- cuCGGcUGGCGGGC-UGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 45006 | 0.79 | 0.054346 |
Target: 5'- -cGCCGACCGCCgGgGCCG-CGCCGCCc -3' miRNA: 3'- cuCGGCUGGCGGgC-UGGUgGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 26098 | 0.79 | 0.054346 |
Target: 5'- cGAGaaGACC-CCCGAgcagaCCGCCGCCGCCg -3' miRNA: 3'- -CUCggCUGGcGGGCU-----GGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 39970 | 0.78 | 0.056896 |
Target: 5'- uGAG-CGACUGCUCGACCACCucgacgggcugaucGCCGCCg -3' miRNA: 3'- -CUCgGCUGGCGGGCUGGUGG--------------CGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 45327 | 0.78 | 0.058924 |
Target: 5'- -cGCCGaACUGCgUGGCCugCGCCGCCu -3' miRNA: 3'- cuCGGC-UGGCGgGCUGGugGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 35518 | 0.78 | 0.060532 |
Target: 5'- -cGCCG-CCGCCgGGCaCACCGcCCGCCg -3' miRNA: 3'- cuCGGCuGGCGGgCUG-GUGGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 35835 | 0.77 | 0.067396 |
Target: 5'- uAGCCGccACCGCCCGcgagcacagguCCGCCGCCGCg -3' miRNA: 3'- cUCGGC--UGGCGGGCu----------GGUGGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 23890 | 0.77 | 0.07303 |
Target: 5'- -cGCUG-CCGCCCGAgCCGCCGCgccCGCCg -3' miRNA: 3'- cuCGGCuGGCGGGCU-GGUGGCG---GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 6912 | 0.79 | 0.048776 |
Target: 5'- -cGCCG-CCGCCaucgaGaACCGCCGCCGCCu -3' miRNA: 3'- cuCGGCuGGCGGg----C-UGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 56885 | 0.79 | 0.047473 |
Target: 5'- uGAGCCGACCGCCaaucgcagcgUGGCCGCCGCaGCa -3' miRNA: 3'- -CUCGGCUGGCGG----------GCUGGUGGCGgUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 45405 | 0.8 | 0.043764 |
Target: 5'- -cGCCGAgCGCgCUGAUgGCCGCCGCCg -3' miRNA: 3'- cuCGGCUgGCG-GGCUGgUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 36657 | 0.9 | 0.007543 |
Target: 5'- cGAGCCG-CCGCCCucGCCGCCGCCGCCg -3' miRNA: 3'- -CUCGGCuGGCGGGc-UGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 48123 | 0.87 | 0.01275 |
Target: 5'- cGAGCacACCGCCuCGACCACCGCCGCCc -3' miRNA: 3'- -CUCGgcUGGCGG-GCUGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 25904 | 0.85 | 0.019271 |
Target: 5'- cGAGgaUGGCCGCCUGAgCCGCCGCCGCCg -3' miRNA: 3'- -CUCg-GCUGGCGGGCU-GGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 67748 | 0.84 | 0.021509 |
Target: 5'- cGGCCacuaGGCCGcCCCGGCCACCGgCCACCg -3' miRNA: 3'- cUCGG----CUGGC-GGGCUGGUGGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 1829 | 0.82 | 0.028293 |
Target: 5'- -cGCCGACCuGCUCG-CCGCUGCCGCCg -3' miRNA: 3'- cuCGGCUGG-CGGGCuGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 35546 | 0.82 | 0.030629 |
Target: 5'- -cGCCGAuCCGCCCGaugacuuGCCGCCGaCCGCCg -3' miRNA: 3'- cuCGGCU-GGCGGGC-------UGGUGGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 37641 | 0.81 | 0.038202 |
Target: 5'- -uGCCcgauGACCGCaCCG-CCGCCGCCGCCg -3' miRNA: 3'- cuCGG----CUGGCG-GGCuGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 37193 | 0.81 | 0.038202 |
Target: 5'- cGAGCUGcggcccuuGCCGCCaCcGCCGCCGCCGCCg -3' miRNA: 3'- -CUCGGC--------UGGCGG-GcUGGUGGCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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