miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 9959 1 0.001353
Target:  5'- cGAGCCGACCGCCCGACCACCG-CACCg -3'
miRNA:   3'- -CUCGGCUGGCGGGCUGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 36657 0.9 0.007543
Target:  5'- cGAGCCG-CCGCCCucGCCGCCGCCGCCg -3'
miRNA:   3'- -CUCGGCuGGCGGGc-UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 48123 0.87 0.01275
Target:  5'- cGAGCacACCGCCuCGACCACCGCCGCCc -3'
miRNA:   3'- -CUCGgcUGGCGG-GCUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 25904 0.85 0.019271
Target:  5'- cGAGgaUGGCCGCCUGAgCCGCCGCCGCCg -3'
miRNA:   3'- -CUCg-GCUGGCGGGCU-GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 67748 0.84 0.021509
Target:  5'- cGGCCacuaGGCCGcCCCGGCCACCGgCCACCg -3'
miRNA:   3'- cUCGG----CUGGC-GGGCUGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 1829 0.82 0.028293
Target:  5'- -cGCCGACCuGCUCG-CCGCUGCCGCCg -3'
miRNA:   3'- cuCGGCUGG-CGGGCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35546 0.82 0.030629
Target:  5'- -cGCCGAuCCGCCCGaugacuuGCCGCCGaCCGCCg -3'
miRNA:   3'- cuCGGCU-GGCGGGC-------UGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37641 0.81 0.038202
Target:  5'- -uGCCcgauGACCGCaCCG-CCGCCGCCGCCg -3'
miRNA:   3'- cuCGG----CUGGCG-GGCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37193 0.81 0.038202
Target:  5'- cGAGCUGcggcccuuGCCGCCaCcGCCGCCGCCGCCg -3'
miRNA:   3'- -CUCGGC--------UGGCGG-GcUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45405 0.8 0.043764
Target:  5'- -cGCCGAgCGCgCUGAUgGCCGCCGCCg -3'
miRNA:   3'- cuCGGCUgGCG-GGCUGgUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 56885 0.79 0.047473
Target:  5'- uGAGCCGACCGCCaaucgcagcgUGGCCGCCGCaGCa -3'
miRNA:   3'- -CUCGGCUGGCGG----------GCUGGUGGCGgUGg -5'
23325 5' -63.2 NC_005259.1 + 6912 0.79 0.048776
Target:  5'- -cGCCG-CCGCCaucgaGaACCGCCGCCGCCu -3'
miRNA:   3'- cuCGGCuGGCGGg----C-UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7570 0.79 0.054346
Target:  5'- -cGCC-ACCGUUCGcGCCGCCGCCGCCg -3'
miRNA:   3'- cuCGGcUGGCGGGC-UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45006 0.79 0.054346
Target:  5'- -cGCCGACCGCCgGgGCCG-CGCCGCCc -3'
miRNA:   3'- cuCGGCUGGCGGgC-UGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26098 0.79 0.054346
Target:  5'- cGAGaaGACC-CCCGAgcagaCCGCCGCCGCCg -3'
miRNA:   3'- -CUCggCUGGcGGGCU-----GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 39970 0.78 0.056896
Target:  5'- uGAG-CGACUGCUCGACCACCucgacgggcugaucGCCGCCg -3'
miRNA:   3'- -CUCgGCUGGCGGGCUGGUGG--------------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45327 0.78 0.058924
Target:  5'- -cGCCGaACUGCgUGGCCugCGCCGCCu -3'
miRNA:   3'- cuCGGC-UGGCGgGCUGGugGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35518 0.78 0.060532
Target:  5'- -cGCCG-CCGCCgGGCaCACCGcCCGCCg -3'
miRNA:   3'- cuCGGCuGGCGGgCUG-GUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35835 0.77 0.067396
Target:  5'- uAGCCGccACCGCCCGcgagcacagguCCGCCGCCGCg -3'
miRNA:   3'- cUCGGC--UGGCGGGCu----------GGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 23890 0.77 0.07303
Target:  5'- -cGCUG-CCGCCCGAgCCGCCGCgccCGCCg -3'
miRNA:   3'- cuCGGCuGGCGGGCU-GGUGGCG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.