miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 22669 0.74 0.117493
Target:  5'- -cGCCGA-CGCaCUGACCGCCGCCgauuuccccGCCg -3'
miRNA:   3'- cuCGGCUgGCG-GGCUGGUGGCGG---------UGG- -5'
23325 5' -63.2 NC_005259.1 + 37155 0.74 0.117493
Target:  5'- uAGCCGucACCGCCgCGcCCGCCGaCGCCg -3'
miRNA:   3'- cUCGGC--UGGCGG-GCuGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 23964 0.74 0.120593
Target:  5'- cGGGCCGAUUGaCCuCGuacCCGCgCGCCACCa -3'
miRNA:   3'- -CUCGGCUGGC-GG-GCu--GGUG-GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 20109 0.74 0.123768
Target:  5'- uGAGCCGccgucucaagGCCGCaCUGGCUGCCGUCGCg -3'
miRNA:   3'- -CUCGGC----------UGGCG-GGCUGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 46556 0.74 0.12506
Target:  5'- -cGCCGACCGCgCCuauggucgcggcgucGACCG-CGCCGCCc -3'
miRNA:   3'- cuCGGCUGGCG-GG---------------CUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 21027 0.73 0.130016
Target:  5'- cAGCUGACCGaugaCCGGCgcgcguucaagguCGCCGCCAUCg -3'
miRNA:   3'- cUCGGCUGGCg---GGCUG-------------GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43275 0.73 0.130353
Target:  5'- aGAGuuGACCGCagCGcCCGCCGCCgacgcGCCc -3'
miRNA:   3'- -CUCggCUGGCGg-GCuGGUGGCGG-----UGG- -5'
23325 5' -63.2 NC_005259.1 + 51715 0.73 0.143761
Target:  5'- -uGUCGACCggacaagGCCCacaugauGGCCACCGCCACg -3'
miRNA:   3'- cuCGGCUGG-------CGGG-------CUGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 13169 0.73 0.144501
Target:  5'- -cGCCcgaGACCGCCCGGCaGCuCGCCAUg -3'
miRNA:   3'- cuCGG---CUGGCGGGCUGgUG-GCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 14675 0.73 0.14674
Target:  5'- cGGGCCGcgugcacucgauuCUGCUCGACCcCCGCCGCg -3'
miRNA:   3'- -CUCGGCu------------GGCGGGCUGGuGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 21710 0.73 0.148251
Target:  5'- cGGGUcagaCGACCGCCCuGCCGCC-CCACa -3'
miRNA:   3'- -CUCG----GCUGGCGGGcUGGUGGcGGUGg -5'
23325 5' -63.2 NC_005259.1 + 46360 0.72 0.159632
Target:  5'- uGGGCCGcgauggcACCGCCCGGCC-CCaucucacgcaGCCGCg -3'
miRNA:   3'- -CUCGGC-------UGGCGGGCUGGuGG----------CGGUGg -5'
23325 5' -63.2 NC_005259.1 + 46791 0.72 0.163736
Target:  5'- cGGGCCGAacaccgaGCCUGcgagcgcACCACCGgCCACCu -3'
miRNA:   3'- -CUCGGCUgg-----CGGGC-------UGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43965 0.72 0.164151
Target:  5'- gGGGCCG-CCGCCUGACCGagggCGgUGCCg -3'
miRNA:   3'- -CUCGGCuGGCGGGCUGGUg---GCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 40836 0.72 0.164151
Target:  5'- uGGGCCGcguguugauGCCcugcGCCuCGACCAUgGCCGCCc -3'
miRNA:   3'- -CUCGGC---------UGG----CGG-GCUGGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 6100 0.72 0.168359
Target:  5'- -cGCCGAgaUCGCCgaGGCCgagGCCGCCGCUa -3'
miRNA:   3'- cuCGGCU--GGCGGg-CUGG---UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15538 0.72 0.168359
Target:  5'- aGGCCG-CCGUcaCUGGCCGgUGCCACCc -3'
miRNA:   3'- cUCGGCuGGCG--GGCUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26038 0.72 0.168359
Target:  5'- uGGCCagcagcGCCGCCggguUGGCCauGCCGCCGCCg -3'
miRNA:   3'- cUCGGc-----UGGCGG----GCUGG--UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7264 0.72 0.172664
Target:  5'- -cGCCaagaaACUGCUCGGCUACCGCC-CCg -3'
miRNA:   3'- cuCGGc----UGGCGGGCUGGUGGCGGuGG- -5'
23325 5' -63.2 NC_005259.1 + 28645 0.71 0.177066
Target:  5'- -uGCCGAcaCCGCCgaGGCCGCCGUCAa- -3'
miRNA:   3'- cuCGGCU--GGCGGg-CUGGUGGCGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.