miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 150 0.67 0.28682
Target:  5'- cCUACUggGCUCGC-CCGgCGGGgucCGGCa -3'
miRNA:   3'- -GAUGG--CGGGCGuGGCgGCCCac-GCCG- -5'
23326 3' -64.4 NC_005259.1 + 4599 0.69 0.226254
Target:  5'- -cACCGCCauagGCacGCUGUCGGGccgGUGGCg -3'
miRNA:   3'- gaUGGCGGg---CG--UGGCGGCCCa--CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 5539 0.67 0.293533
Target:  5'- gCUGCucuCGCCCGagGCCGCgUGGG-GUGGUg -3'
miRNA:   3'- -GAUG---GCGGGCg-UGGCG-GCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 5707 0.7 0.185924
Target:  5'- gUGCCGCCaagGcCAgCGCCGGacgGCGGCc -3'
miRNA:   3'- gAUGGCGGg--C-GUgGCGGCCca-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 6267 0.68 0.261178
Target:  5'- -cACCGCCgcCGCGCCuaccucgugGUCGaguGGUGCGGUa -3'
miRNA:   3'- gaUGGCGG--GCGUGG---------CGGC---CCACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 7189 0.67 0.321607
Target:  5'- gUGCCcgGCCUGCGgaCGCacCGGGcUGCGGUg -3'
miRNA:   3'- gAUGG--CGGGCGUg-GCG--GCCC-ACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 7573 0.7 0.176442
Target:  5'- -cACCGUUCGCGCCGCCGccgccgaccucaaGGU-CGGUg -3'
miRNA:   3'- gaUGGCGGGCGUGGCGGC-------------CCAcGCCG- -5'
23326 3' -64.4 NC_005259.1 + 8045 0.67 0.300368
Target:  5'- -aACUGUCCGaCACCGCCGGucGCcGCc -3'
miRNA:   3'- gaUGGCGGGC-GUGGCGGCCcaCGcCG- -5'
23326 3' -64.4 NC_005259.1 + 8191 0.68 0.273759
Target:  5'- cCUGCCGUuuaCGCGCCcgauGUCGGGcaacagcgagcgUGCGGUg -3'
miRNA:   3'- -GAUGGCGg--GCGUGG----CGGCCC------------ACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 8353 0.73 0.11465
Target:  5'- gCUGCUGCCgGUAUCGCuCGGcG-GCGGCc -3'
miRNA:   3'- -GAUGGCGGgCGUGGCG-GCC-CaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 9813 1.11 0.000145
Target:  5'- aCUACCGCCCGCACCGCCGGGUGCGGCg -3'
miRNA:   3'- -GAUGGCGGGCGUGGCGGCCCACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 9965 0.68 0.249072
Target:  5'- -gACCGCCCGacCACCGCaCcGGUcgagGUGGCc -3'
miRNA:   3'- gaUGGCGGGC--GUGGCG-GcCCA----CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 11445 0.7 0.19537
Target:  5'- -gGCCGCUCGCuGCCGCC-GGUGCc-- -3'
miRNA:   3'- gaUGGCGGGCG-UGGCGGcCCACGccg -5'
23326 3' -64.4 NC_005259.1 + 12223 0.68 0.255066
Target:  5'- -cACCGCCCGC-UgGCCGGGcaaUGGUc -3'
miRNA:   3'- gaUGGCGGGCGuGgCGGCCCac-GCCG- -5'
23326 3' -64.4 NC_005259.1 + 12526 0.7 0.18317
Target:  5'- gCUACCcguagagccgagcgaGCCCcacgGCAUUGCCGGG-GUGGCc -3'
miRNA:   3'- -GAUGG---------------CGGG----CGUGGCGGCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 13429 0.66 0.343948
Target:  5'- -cGCCGCCgGgGCCGCgcuaGGcGUgaccgucggcGCGGCg -3'
miRNA:   3'- gaUGGCGGgCgUGGCGg---CC-CA----------CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 14317 0.72 0.127142
Target:  5'- -gGCCGCCCucgaCGCCGCCGcccgcGUGCGGg -3'
miRNA:   3'- gaUGGCGGGc---GUGGCGGCc----CACGCCg -5'
23326 3' -64.4 NC_005259.1 + 15383 0.66 0.367385
Target:  5'- gCUGCCGCaaCCGUgGCCGCgcacucccaaGGGUGCGcuGCg -3'
miRNA:   3'- -GAUGGCG--GGCG-UGGCGg---------CCCACGC--CG- -5'
23326 3' -64.4 NC_005259.1 + 19556 0.67 0.314404
Target:  5'- ---aUGCCCGCAgCCGUCGGGacaGCGccGCa -3'
miRNA:   3'- gaugGCGGGCGU-GGCGGCCCa--CGC--CG- -5'
23326 3' -64.4 NC_005259.1 + 19861 0.66 0.35164
Target:  5'- gUGgCGCUCGCGcCCGCCGGGaucgccgacGCcGCg -3'
miRNA:   3'- gAUgGCGGGCGU-GGCGGCCCa--------CGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.