miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 15383 0.66 0.367385
Target:  5'- gCUGCCGCaaCCGUgGCCGCgcacucccaaGGGUGCGcuGCg -3'
miRNA:   3'- -GAUGGCG--GGCG-UGGCGg---------CCCACGC--CG- -5'
23326 3' -64.4 NC_005259.1 + 26421 0.73 0.108843
Target:  5'- gUGCCGCCguagaaCGCACCGCCGagcGG-GCGGg -3'
miRNA:   3'- gAUGGCGG------GCGUGGCGGC---CCaCGCCg -5'
23326 3' -64.4 NC_005259.1 + 50052 0.73 0.111711
Target:  5'- -cACCGcCCCGCACgCGaaaCGGGguguagaccUGCGGCa -3'
miRNA:   3'- gaUGGC-GGGCGUG-GCg--GCCC---------ACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 26804 0.73 0.111711
Target:  5'- -cGCCGCCCGguUgGCCGGuaccgGCGGUg -3'
miRNA:   3'- gaUGGCGGGCguGgCGGCCca---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 50698 0.73 0.11465
Target:  5'- gCUGCuCGUcgUCGCGCUugaGCCGGGUGCuGGCu -3'
miRNA:   3'- -GAUG-GCG--GGCGUGG---CGGCCCACG-CCG- -5'
23326 3' -64.4 NC_005259.1 + 8353 0.73 0.11465
Target:  5'- gCUGCUGCCgGUAUCGCuCGGcG-GCGGCc -3'
miRNA:   3'- -GAUGGCGGgCGUGGCG-GCC-CaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 43252 0.73 0.11465
Target:  5'- aUGCCGCCCGC---GCCGGGUGCc-- -3'
miRNA:   3'- gAUGGCGGGCGuggCGGCCCACGccg -5'
23326 3' -64.4 NC_005259.1 + 14317 0.72 0.127142
Target:  5'- -gGCCGCCCucgaCGCCGCCGcccgcGUGCGGg -3'
miRNA:   3'- gaUGGCGGGc---GUGGCGGCc----CACGCCg -5'
23326 3' -64.4 NC_005259.1 + 66260 0.72 0.140884
Target:  5'- -cGCgGCCCGC---GCCGGGcgGCGGCu -3'
miRNA:   3'- gaUGgCGGGCGuggCGGCCCa-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 37649 0.74 0.103312
Target:  5'- -gACCGCaCCGcCGCCGCCGccGGUGCcGCc -3'
miRNA:   3'- gaUGGCG-GGC-GUGGCGGC--CCACGcCG- -5'
23326 3' -64.4 NC_005259.1 + 63168 0.74 0.098046
Target:  5'- -aGCCGCCgcaGCGCCGCCGaGGUGaucGCa -3'
miRNA:   3'- gaUGGCGGg--CGUGGCGGC-CCACgc-CG- -5'
23326 3' -64.4 NC_005259.1 + 36622 0.74 0.098046
Target:  5'- uUGCCGCCCGCGCCGCCcgcaa-GGCc -3'
miRNA:   3'- gAUGGCGGGCGUGGCGGcccacgCCG- -5'
23326 3' -64.4 NC_005259.1 + 48171 0.81 0.030181
Target:  5'- -aACCGCCCccgcCGCCGCCGGGUGuCGGa -3'
miRNA:   3'- gaUGGCGGGc---GUGGCGGCCCAC-GCCg -5'
23326 3' -64.4 NC_005259.1 + 45836 0.79 0.04292
Target:  5'- aUGCCGUCCGCACCaCCGGGgccgGUGGg -3'
miRNA:   3'- gAUGGCGGGCGUGGcGGCCCa---CGCCg -5'
23326 3' -64.4 NC_005259.1 + 46069 0.79 0.044094
Target:  5'- -aGCUGCUCaaGCACCGCCGGGgcgaGCGGUg -3'
miRNA:   3'- gaUGGCGGG--CGUGGCGGCCCa---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 36854 0.77 0.054683
Target:  5'- -cGCCGCCCGCugCGCCGu-UGCuGGCa -3'
miRNA:   3'- gaUGGCGGGCGugGCGGCccACG-CCG- -5'
23326 3' -64.4 NC_005259.1 + 26387 0.77 0.057694
Target:  5'- cCUGuuGCUCGCGauuccgaCGCCGGGcGCGGCg -3'
miRNA:   3'- -GAUggCGGGCGUg------GCGGCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 46166 0.75 0.081549
Target:  5'- aUACCGCuuGC-CCGCCGGGcGCGuCg -3'
miRNA:   3'- gAUGGCGggCGuGGCGGCCCaCGCcG- -5'
23326 3' -64.4 NC_005259.1 + 44993 0.74 0.093035
Target:  5'- aCUGCCGaggcaCCGCcgACCGCCGGG-GCcGCg -3'
miRNA:   3'- -GAUGGCg----GGCG--UGGCGGCCCaCGcCG- -5'
23326 3' -64.4 NC_005259.1 + 37206 0.74 0.09551
Target:  5'- uUGCCGCcaCCGCcgccGCCGCCGGGgcGCuGGCc -3'
miRNA:   3'- gAUGGCG--GGCG----UGGCGGCCCa-CG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.