miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 5' -56 NC_005259.1 + 61599 0.66 0.779484
Target:  5'- gGGCCGGugGggucggCGGGGAacagcagaccggcacCGCcGACGGUGa -3'
miRNA:   3'- aCUGGUCugC------GCCCUU---------------GCG-CUGCUAC- -5'
23326 5' -56 NC_005259.1 + 15570 0.66 0.775591
Target:  5'- gUGGCCAccCuCGGGGccaGCGCGACGGg- -3'
miRNA:   3'- -ACUGGUcuGcGCCCU---UGCGCUGCUac -5'
23326 5' -56 NC_005259.1 + 42531 0.66 0.772656
Target:  5'- cGGCCccgaugggcaccgaGGugGCGGGcAGCuCGGCGAg- -3'
miRNA:   3'- aCUGG--------------UCugCGCCC-UUGcGCUGCUac -5'
23326 5' -56 NC_005259.1 + 64589 0.66 0.769709
Target:  5'- gGGCCAgcacaccaacgagguGACuGaCGGcGAGCGCGACGGg- -3'
miRNA:   3'- aCUGGU---------------CUG-C-GCC-CUUGCGCUGCUac -5'
23326 5' -56 NC_005259.1 + 41905 0.66 0.745724
Target:  5'- gGAUgAG-CGCGGGAGCuCGAaGGUGa -3'
miRNA:   3'- aCUGgUCuGCGCCCUUGcGCUgCUAC- -5'
23326 5' -56 NC_005259.1 + 68304 0.66 0.735537
Target:  5'- gGAUCGGGCGCguccggcgacGGGAuCuCGAUGAUGg -3'
miRNA:   3'- aCUGGUCUGCG----------CCCUuGcGCUGCUAC- -5'
23326 5' -56 NC_005259.1 + 62736 0.67 0.714877
Target:  5'- cGACCGGACcgGCGGcaguACGCGGUGGUa -3'
miRNA:   3'- aCUGGUCUG--CGCCcu--UGCGCUGCUAc -5'
23326 5' -56 NC_005259.1 + 64902 0.67 0.704426
Target:  5'- gUGACaCGaGCGaCGGcGAGCGUGAgGAUGa -3'
miRNA:   3'- -ACUG-GUcUGC-GCC-CUUGCGCUgCUAC- -5'
23326 5' -56 NC_005259.1 + 461 0.67 0.704426
Target:  5'- aGGCCAGACcUGGcAACGCGAUGu-- -3'
miRNA:   3'- aCUGGUCUGcGCCcUUGCGCUGCuac -5'
23326 5' -56 NC_005259.1 + 33581 0.67 0.703377
Target:  5'- uUGACCGcGuCGCGGGccaccgaGGCGCGGuCGAg- -3'
miRNA:   3'- -ACUGGU-CuGCGCCC-------UUGCGCU-GCUac -5'
23326 5' -56 NC_005259.1 + 35664 0.67 0.693909
Target:  5'- gUGGCCAG-CGCGGuGGugGUGcacaGCGAc- -3'
miRNA:   3'- -ACUGGUCuGCGCC-CUugCGC----UGCUac -5'
23326 5' -56 NC_005259.1 + 14561 0.67 0.683335
Target:  5'- aGGCCGa--GCGGGGAC-CGGCGAa- -3'
miRNA:   3'- aCUGGUcugCGCCCUUGcGCUGCUac -5'
23326 5' -56 NC_005259.1 + 30489 0.68 0.640675
Target:  5'- aGGCCAGACcCGGcGAgaccuuGCGCGAUGuguUGa -3'
miRNA:   3'- aCUGGUCUGcGCC-CU------UGCGCUGCu--AC- -5'
23326 5' -56 NC_005259.1 + 66935 0.68 0.619262
Target:  5'- cGACCGGGgugaGCGGGAcAC-CGGCGAg- -3'
miRNA:   3'- aCUGGUCUg---CGCCCU-UGcGCUGCUac -5'
23326 5' -56 NC_005259.1 + 11596 0.69 0.566064
Target:  5'- uUGGCCGGAguuUGCuGGAACGCu-CGAUGu -3'
miRNA:   3'- -ACUGGUCU---GCGcCCUUGCGcuGCUAC- -5'
23326 5' -56 NC_005259.1 + 29103 0.7 0.534689
Target:  5'- gUGAgCuGAUGCGGacccugcugguGAGCGCGGCGGUa -3'
miRNA:   3'- -ACUgGuCUGCGCC-----------CUUGCGCUGCUAc -5'
23326 5' -56 NC_005259.1 + 45628 0.71 0.474001
Target:  5'- -cGCCGGGC-CGGGcAGCGCGcCGGUGc -3'
miRNA:   3'- acUGGUCUGcGCCC-UUGCGCuGCUAC- -5'
23326 5' -56 NC_005259.1 + 5553 0.71 0.464217
Target:  5'- aGGCC--GCGUGGGGugGUGACGGc- -3'
miRNA:   3'- aCUGGucUGCGCCCUugCGCUGCUac -5'
23326 5' -56 NC_005259.1 + 68696 0.71 0.454539
Target:  5'- aUGAUC-GAgGCGGGcAGCGCGuCGGUGc -3'
miRNA:   3'- -ACUGGuCUgCGCCC-UUGCGCuGCUAC- -5'
23326 5' -56 NC_005259.1 + 53043 0.71 0.434578
Target:  5'- gUGACCu--CGCGGGAaauugcuGCGUGACGGg- -3'
miRNA:   3'- -ACUGGucuGCGCCCU-------UGCGCUGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.