miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23327 5' -54.7 NC_005259.1 + 9423 1.11 0.001189
Target:  5'- cCACACCGUUGUCGAGCAGCCACACGCc -3'
miRNA:   3'- -GUGUGGCAACAGCUCGUCGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 62846 0.84 0.080339
Target:  5'- gCGCGCgGUUGaCGAGCAGCCGCucgGCGCg -3'
miRNA:   3'- -GUGUGgCAACaGCUCGUCGGUG---UGCG- -5'
23327 5' -54.7 NC_005259.1 + 66228 0.78 0.199102
Target:  5'- aCGCACaCGcgGUCGuGCAGCCAUcgACGCa -3'
miRNA:   3'- -GUGUG-GCaaCAGCuCGUCGGUG--UGCG- -5'
23327 5' -54.7 NC_005259.1 + 8654 0.76 0.285201
Target:  5'- gAgGCUGUgGUCGGGCuGCCACGCGg -3'
miRNA:   3'- gUgUGGCAaCAGCUCGuCGGUGUGCg -5'
23327 5' -54.7 NC_005259.1 + 60673 0.74 0.354689
Target:  5'- aCGCACgCGUucUGcacCGAGCGGUgGCACGCa -3'
miRNA:   3'- -GUGUG-GCA--ACa--GCUCGUCGgUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 49441 0.74 0.363109
Target:  5'- aGCGCCGccuugGUCG-GCAGCCGgAUGCc -3'
miRNA:   3'- gUGUGGCaa---CAGCuCGUCGGUgUGCG- -5'
23327 5' -54.7 NC_005259.1 + 63153 0.74 0.38036
Target:  5'- -uCGCCcacGUUGAGCAGCCGC-CGCa -3'
miRNA:   3'- guGUGGcaaCAGCUCGUCGGUGuGCG- -5'
23327 5' -54.7 NC_005259.1 + 41369 0.73 0.389189
Target:  5'- gCACAgCGUgcgGUCGAGCuuGGCCgguacccaugGCGCGCc -3'
miRNA:   3'- -GUGUgGCAa--CAGCUCG--UCGG----------UGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 17731 0.73 0.407244
Target:  5'- aCGCACCGUggcUGcUCGAcGCGauccgugaggccGCCGCGCGCc -3'
miRNA:   3'- -GUGUGGCA---AC-AGCU-CGU------------CGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 23674 0.73 0.416467
Target:  5'- -cCGCCGacccCGAGCAGgCGCACGCa -3'
miRNA:   3'- guGUGGCaacaGCUCGUCgGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 19654 0.72 0.435289
Target:  5'- gGCACCGcc-UCGGGCAGCCGCuACa- -3'
miRNA:   3'- gUGUGGCaacAGCUCGUCGGUG-UGcg -5'
23327 5' -54.7 NC_005259.1 + 27475 0.72 0.444882
Target:  5'- gGgGCCGggGUCGGuGUGGCCAC-CGCc -3'
miRNA:   3'- gUgUGGCaaCAGCU-CGUCGGUGuGCG- -5'
23327 5' -54.7 NC_005259.1 + 57315 0.72 0.454593
Target:  5'- aGCACCGgcggUGUCGGuGUGGUCAUguGCGCu -3'
miRNA:   3'- gUGUGGCa---ACAGCU-CGUCGGUG--UGCG- -5'
23327 5' -54.7 NC_005259.1 + 42649 0.72 0.454593
Target:  5'- gGCcCCGaUGU-GGGCGGCCACGCGg -3'
miRNA:   3'- gUGuGGCaACAgCUCGUCGGUGUGCg -5'
23327 5' -54.7 NC_005259.1 + 941 0.72 0.464417
Target:  5'- gACAgCGgaaaaGUCGGGCAGCU-CGCGCa -3'
miRNA:   3'- gUGUgGCaa---CAGCUCGUCGGuGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 51251 0.72 0.464417
Target:  5'- uCACGCCGUUGcggcUCGcGGUGGUCACgguGCGCg -3'
miRNA:   3'- -GUGUGGCAAC----AGC-UCGUCGGUG---UGCG- -5'
23327 5' -54.7 NC_005259.1 + 40599 0.72 0.474351
Target:  5'- gCACAUCGUUGUaggucuGGCuGCCGuCGCGCa -3'
miRNA:   3'- -GUGUGGCAACAgc----UCGuCGGU-GUGCG- -5'
23327 5' -54.7 NC_005259.1 + 25202 0.72 0.48439
Target:  5'- -cCACCGggGUC-AGCGGCUACAagccCGCg -3'
miRNA:   3'- guGUGGCaaCAGcUCGUCGGUGU----GCG- -5'
23327 5' -54.7 NC_005259.1 + 55902 0.72 0.48439
Target:  5'- uCGCGCCGggGUCGcuGGcCAGaCCGCugGUc -3'
miRNA:   3'- -GUGUGGCaaCAGC--UC-GUC-GGUGugCG- -5'
23327 5' -54.7 NC_005259.1 + 61724 0.71 0.504766
Target:  5'- cCACACC-UUGUCGAGCAGgUGUGCGUc -3'
miRNA:   3'- -GUGUGGcAACAGCUCGUCgGUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.