miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23327 5' -54.7 NC_005259.1 + 941 0.72 0.464417
Target:  5'- gACAgCGgaaaaGUCGGGCAGCU-CGCGCa -3'
miRNA:   3'- gUGUgGCaa---CAGCUCGUCGGuGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 1586 0.66 0.80896
Target:  5'- cCACACCGagGUCGAGgucagGGCacaAUugGCc -3'
miRNA:   3'- -GUGUGGCaaCAGCUCg----UCGg--UGugCG- -5'
23327 5' -54.7 NC_005259.1 + 3096 0.7 0.589377
Target:  5'- gCGCAgCGaUGagCGGGCGGCCAuUGCGCg -3'
miRNA:   3'- -GUGUgGCaACa-GCUCGUCGGU-GUGCG- -5'
23327 5' -54.7 NC_005259.1 + 3851 0.68 0.675043
Target:  5'- uCGCACCGUcgacgccgGUCGAGC-GCCucgagcccaccccGCAgCGCg -3'
miRNA:   3'- -GUGUGGCAa-------CAGCUCGuCGG-------------UGU-GCG- -5'
23327 5' -54.7 NC_005259.1 + 4428 0.67 0.729329
Target:  5'- gCGCGCCcgagGUCGAGCcGCC-CGUGCg -3'
miRNA:   3'- -GUGUGGcaa-CAGCUCGuCGGuGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 5492 0.67 0.760203
Target:  5'- aGCGCCGag--CGAGgaucgAGCUACGCGCg -3'
miRNA:   3'- gUGUGGCaacaGCUCg----UCGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 5721 0.66 0.789927
Target:  5'- aGCGCCGga--CG-GCGGCCAUucuCGCg -3'
miRNA:   3'- gUGUGGCaacaGCuCGUCGGUGu--GCG- -5'
23327 5' -54.7 NC_005259.1 + 5903 0.68 0.665315
Target:  5'- cCACGUCGagGUCGAGguGCUGCGCa- -3'
miRNA:   3'- -GUGUGGCaaCAGCUCguCGGUGUGcg -5'
23327 5' -54.7 NC_005259.1 + 7246 0.71 0.515091
Target:  5'- cCGCGCCGgUGUCGAGUGcGCCAagaaACuGCu -3'
miRNA:   3'- -GUGUGGCaACAGCUCGU-CGGUg---UG-CG- -5'
23327 5' -54.7 NC_005259.1 + 7860 0.68 0.691179
Target:  5'- cCGCGCCGaccccggugGcccgagugcuuggacUCGGGCAGCCGCcgauaGCGCa -3'
miRNA:   3'- -GUGUGGCaa-------C---------------AGCUCGUCGGUG-----UGCG- -5'
23327 5' -54.7 NC_005259.1 + 8310 0.68 0.683662
Target:  5'- aACGCCGccUUGUCgGAGCugccgacggcgaucAGCCGguCACGCu -3'
miRNA:   3'- gUGUGGC--AACAG-CUCG--------------UCGGU--GUGCG- -5'
23327 5' -54.7 NC_005259.1 + 8654 0.76 0.285201
Target:  5'- gAgGCUGUgGUCGGGCuGCCACGCGg -3'
miRNA:   3'- gUgUGGCAaCAGCUCGuCGGUGUGCg -5'
23327 5' -54.7 NC_005259.1 + 9125 0.67 0.770254
Target:  5'- aCGCGCCccgGUaCGGGCAGCCguGCuCGUg -3'
miRNA:   3'- -GUGUGGcaaCA-GCUCGUCGG--UGuGCG- -5'
23327 5' -54.7 NC_005259.1 + 9423 1.11 0.001189
Target:  5'- cCACACCGUUGUCGAGCAGCCACACGCc -3'
miRNA:   3'- -GUGUGGCAACAGCUCGUCGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 11224 0.67 0.729329
Target:  5'- aCACGCCGcaguccucggGcUCGGGCA-UCGCGCGCa -3'
miRNA:   3'- -GUGUGGCaa--------C-AGCUCGUcGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 13417 0.67 0.73973
Target:  5'- cCugGCCGggGUCGccGCcggGGCCGCGCuagGCg -3'
miRNA:   3'- -GugUGGCaaCAGCu-CG---UCGGUGUG---CG- -5'
23327 5' -54.7 NC_005259.1 + 13632 0.68 0.718833
Target:  5'- gCGgGCCGcucaacGUCGA-CGGCUACGCGCc -3'
miRNA:   3'- -GUgUGGCaa----CAGCUcGUCGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 17350 0.66 0.780165
Target:  5'- -uCGCCGUcgagGUCG-GCGGCUcgGCGCu -3'
miRNA:   3'- guGUGGCAa---CAGCuCGUCGGugUGCG- -5'
23327 5' -54.7 NC_005259.1 + 17731 0.73 0.407244
Target:  5'- aCGCACCGUggcUGcUCGAcGCGauccgugaggccGCCGCGCGCc -3'
miRNA:   3'- -GUGUGGCA---AC-AGCU-CGU------------CGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 19303 0.68 0.697601
Target:  5'- aACGCCGagGcacUCGAGgaAGCCAuCGCGCu -3'
miRNA:   3'- gUGUGGCaaC---AGCUCg-UCGGU-GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.