miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 54571 0.68 0.728698
Target:  5'- gAGCucaGugAGCUuGUC-GCGGUGGGCa -3'
miRNA:   3'- -UCGug-CugUCGGuUAGcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 41876 0.68 0.727643
Target:  5'- cAGCACcguGGCgGGCCGAUacgcaugCGG-GAUGAGCg -3'
miRNA:   3'- -UCGUG---CUG-UCGGUUA-------GCCgCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 41705 0.68 0.726587
Target:  5'- aGGCAUG-CAGCCGccgcauaccggCGGCGggGAGg -3'
miRNA:   3'- -UCGUGCuGUCGGUua---------GCCGCuaCUCg -5'
23328 3' -54.1 NC_005259.1 + 3531 0.68 0.718106
Target:  5'- gGGCACGACaccgaccacAGCCAGaUCcGCGAgcuugccGAGCu -3'
miRNA:   3'- -UCGUGCUG---------UCGGUU-AGcCGCUa------CUCG- -5'
23328 3' -54.1 NC_005259.1 + 46514 0.68 0.718106
Target:  5'- cGUACGAUcccgcgAGCCGGUCGGgGAUcgccGAGa -3'
miRNA:   3'- uCGUGCUG------UCGGUUAGCCgCUA----CUCg -5'
23328 3' -54.1 NC_005259.1 + 54505 0.68 0.718106
Target:  5'- gGGCAUGGCGGCgAuguggggUGGCGGgucGAGUa -3'
miRNA:   3'- -UCGUGCUGUCGgUua-----GCCGCUa--CUCG- -5'
23328 3' -54.1 NC_005259.1 + 42516 0.68 0.707429
Target:  5'- uGGC-CaGCAGCCGucCGGCcccGAUGGGCa -3'
miRNA:   3'- -UCGuGcUGUCGGUuaGCCG---CUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 19942 0.68 0.704211
Target:  5'- aAGCACGcgugugcguccgcaACGGCgGcUCGGCGGugUGGGUg -3'
miRNA:   3'- -UCGUGC--------------UGUCGgUuAGCCGCU--ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 28989 0.68 0.69668
Target:  5'- gAGCGCccgcuACGGCCAcgagAUCGGCGAau-GCg -3'
miRNA:   3'- -UCGUGc----UGUCGGU----UAGCCGCUacuCG- -5'
23328 3' -54.1 NC_005259.1 + 65984 0.68 0.69668
Target:  5'- aGGCGCGccgaGCAGCCGcUCGacGUGGUGcGCa -3'
miRNA:   3'- -UCGUGC----UGUCGGUuAGC--CGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 57525 0.68 0.685868
Target:  5'- cAGCGCuu--GCCGA-CGGCGAUG-GCg -3'
miRNA:   3'- -UCGUGcuguCGGUUaGCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 57821 0.68 0.685868
Target:  5'- cGCACGcAUGGCCAgAUCGGCacgGAUGAc- -3'
miRNA:   3'- uCGUGC-UGUCGGU-UAGCCG---CUACUcg -5'
23328 3' -54.1 NC_005259.1 + 19220 0.68 0.685868
Target:  5'- cGGCgACGugGGacaCCgAGUCGGCGAUGAu- -3'
miRNA:   3'- -UCG-UGCugUC---GG-UUAGCCGCUACUcg -5'
23328 3' -54.1 NC_005259.1 + 42423 0.68 0.685868
Target:  5'- cGGUGCGGCAGCCGAaacacagcguguUCGGCGuccaacAGUc -3'
miRNA:   3'- -UCGUGCUGUCGGUU------------AGCCGCuac---UCG- -5'
23328 3' -54.1 NC_005259.1 + 1287 0.68 0.685868
Target:  5'- uGCACGACcccgaGGUCGAgcucuacgCGGUcGUGAGCg -3'
miRNA:   3'- uCGUGCUG-----UCGGUUa-------GCCGcUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 31170 0.68 0.685868
Target:  5'- gAGCuCGcCcuugAGCCAGUCGGCGAgGAuGCc -3'
miRNA:   3'- -UCGuGCuG----UCGGUUAGCCGCUaCU-CG- -5'
23328 3' -54.1 NC_005259.1 + 61569 0.69 0.675005
Target:  5'- cGGCAcCGGCAGUUgagGAUCucauGCGGUGGGCc -3'
miRNA:   3'- -UCGU-GCUGUCGG---UUAGc---CGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 50123 0.69 0.664102
Target:  5'- cGCACgGGCAccGCCAcacgcgauugGUUGGCGAuccggcgcgUGAGCg -3'
miRNA:   3'- uCGUG-CUGU--CGGU----------UAGCCGCU---------ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 6528 0.69 0.664102
Target:  5'- cGCGCGACaaccGGCCucggggCGaGCGGUGaAGCu -3'
miRNA:   3'- uCGUGCUG----UCGGuua---GC-CGCUAC-UCG- -5'
23328 3' -54.1 NC_005259.1 + 52612 0.69 0.6466
Target:  5'- cGUACGGUGGCCAacuacgucgagcugcGUCGGCuguggggcgaGGUGAGCg -3'
miRNA:   3'- uCGUGCUGUCGGU---------------UAGCCG----------CUACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.