miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 60276 0.67 0.789846
Target:  5'- cAGCGCugccgGGCGGCCAucGUCGuCGGUGcGGCc -3'
miRNA:   3'- -UCGUG-----CUGUCGGU--UAGCcGCUAC-UCG- -5'
23328 3' -54.1 NC_005259.1 + 41489 0.67 0.789846
Target:  5'- gAGCACGACc-----UCGGCGGUG-GCg -3'
miRNA:   3'- -UCGUGCUGucgguuAGCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 36381 0.67 0.789846
Target:  5'- aAGCgGCGAgguUGGCCAGcgCGaGCGAcuUGAGCg -3'
miRNA:   3'- -UCG-UGCU---GUCGGUUa-GC-CGCU--ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 964 0.67 0.789846
Target:  5'- cGCGCaACGGCuCAA-CGGCGAcGAGa -3'
miRNA:   3'- uCGUGcUGUCG-GUUaGCCGCUaCUCg -5'
23328 3' -54.1 NC_005259.1 + 63038 0.67 0.789846
Target:  5'- gAGCugacuCGACAGCagCGGUgCGuacaucGCGAUGAGCu -3'
miRNA:   3'- -UCGu----GCUGUCG--GUUA-GC------CGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 5726 0.67 0.788868
Target:  5'- cGgACGGCGGCCAuucUCGcggccaaGCGgcGAGCu -3'
miRNA:   3'- uCgUGCUGUCGGUu--AGC-------CGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 13294 0.67 0.779997
Target:  5'- aAGUauugACGugAGCCAGUgCGGCG--GGGUa -3'
miRNA:   3'- -UCG----UGCugUCGGUUA-GCCGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 18759 0.67 0.779997
Target:  5'- uGCuCGACAuggccuGCCAcAUC-GCGGUGGGCa -3'
miRNA:   3'- uCGuGCUGU------CGGU-UAGcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 57866 0.67 0.779997
Target:  5'- cGGUGCGACAcCCucgaugUGGCGGUGcGCg -3'
miRNA:   3'- -UCGUGCUGUcGGuua---GCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 54136 0.67 0.769997
Target:  5'- cGUGaccaGACGGUuuCGAggccCGGCGAUGGGCa -3'
miRNA:   3'- uCGUg---CUGUCG--GUUa---GCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 27092 0.67 0.769997
Target:  5'- uGCgGCGGCuGCCAu---GCGGUGGGCu -3'
miRNA:   3'- uCG-UGCUGuCGGUuagcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 16500 0.67 0.769997
Target:  5'- cGCGCGcAUGGCCGAgagcgaGGCGcugcGAGCg -3'
miRNA:   3'- uCGUGC-UGUCGGUUag----CCGCua--CUCG- -5'
23328 3' -54.1 NC_005259.1 + 57303 0.67 0.769997
Target:  5'- uGCACGACA-UCGAgcacCGGCGGUGucGGUg -3'
miRNA:   3'- uCGUGCUGUcGGUUa---GCCGCUAC--UCG- -5'
23328 3' -54.1 NC_005259.1 + 7406 0.67 0.759855
Target:  5'- cGCaACGGCAuccucgucGCC-GUCGGCGGUGcccGCg -3'
miRNA:   3'- uCG-UGCUGU--------CGGuUAGCCGCUACu--CG- -5'
23328 3' -54.1 NC_005259.1 + 58393 0.67 0.759855
Target:  5'- cGGUGCGcacCAGCCAccggCGGCGAUcagagauccaccGGGCa -3'
miRNA:   3'- -UCGUGCu--GUCGGUua--GCCGCUA------------CUCG- -5'
23328 3' -54.1 NC_005259.1 + 64789 0.67 0.756787
Target:  5'- cGCuGCGACuggcugugugccucGGCC--UCGGCGGcaaUGAGCg -3'
miRNA:   3'- uCG-UGCUG--------------UCGGuuAGCCGCU---ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 31245 0.67 0.756787
Target:  5'- gGGCGCGGCGgugccgccccacacGCCGcaguaGGCGGUG-GCg -3'
miRNA:   3'- -UCGUGCUGU--------------CGGUuag--CCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 26343 0.67 0.756787
Target:  5'- uAGCACGcCcucgGGCCGagcugcgcguagauGUCGGUGgcGAGCc -3'
miRNA:   3'- -UCGUGCuG----UCGGU--------------UAGCCGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 23615 0.68 0.739195
Target:  5'- cGCgugGCGGCAGCCAGaCGGCucGGUGuGGUu -3'
miRNA:   3'- uCG---UGCUGUCGGUUaGCCG--CUAC-UCG- -5'
23328 3' -54.1 NC_005259.1 + 64132 0.68 0.736057
Target:  5'- cGCcugacCGAgCGGCCcGUCGGCGAUGcccuugacguagucGGCg -3'
miRNA:   3'- uCGu----GCU-GUCGGuUAGCCGCUAC--------------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.