miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 65876 0.71 0.512676
Target:  5'- cGGUggGGCGGUCAAUCGGCGGgacGGUc -3'
miRNA:   3'- -UCGugCUGUCGGUUAGCCGCUac-UCG- -5'
23328 3' -54.1 NC_005259.1 + 14029 0.71 0.523158
Target:  5'- cGGCACGaucaucgagcgGCAGCgCAucGUCGGCGAcGAGa -3'
miRNA:   3'- -UCGUGC-----------UGUCG-GU--UAGCCGCUaCUCg -5'
23328 3' -54.1 NC_005259.1 + 41081 0.71 0.53372
Target:  5'- uGuCACG-CAGCCGgucguaGUCGGCGGUcGGCg -3'
miRNA:   3'- uC-GUGCuGUCGGU------UAGCCGCUAcUCG- -5'
23328 3' -54.1 NC_005259.1 + 33903 0.71 0.544358
Target:  5'- cGCGCGACgGGCCGAgacCGGCcacGGUgcGAGCa -3'
miRNA:   3'- uCGUGCUG-UCGGUUa--GCCG---CUA--CUCG- -5'
23328 3' -54.1 NC_005259.1 + 1936 0.7 0.565829
Target:  5'- uGC-CGACGGuCCAcacCGGCG-UGAGCg -3'
miRNA:   3'- uCGuGCUGUC-GGUua-GCCGCuACUCG- -5'
23328 3' -54.1 NC_005259.1 + 66645 0.7 0.565829
Target:  5'- cGCuCGgauuGCuGCCGGUCGGCGGUGcuGCg -3'
miRNA:   3'- uCGuGC----UGuCGGUUAGCCGCUACu-CG- -5'
23328 3' -54.1 NC_005259.1 + 60754 0.7 0.576649
Target:  5'- uGCAguGCAGUCGGcUCGGCGAgguUGGGCu -3'
miRNA:   3'- uCGUgcUGUCGGUU-AGCCGCU---ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 45747 0.7 0.598415
Target:  5'- cGCGC-ACcGCC--UCGGgGAUGAGCa -3'
miRNA:   3'- uCGUGcUGuCGGuuAGCCgCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 67446 0.7 0.598415
Target:  5'- gAGCGCGuCGgggauGCCcuuuUCGGCGAUG-GCg -3'
miRNA:   3'- -UCGUGCuGU-----CGGuu--AGCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 2147 0.7 0.609346
Target:  5'- cGCACGGugcUGGCCAG-CGGCGucGAGCc -3'
miRNA:   3'- uCGUGCU---GUCGGUUaGCCGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 8757 0.7 0.609346
Target:  5'- gAGguCGAggcccuUGGCCAGcgcggCGGUGAUGAGCu -3'
miRNA:   3'- -UCguGCU------GUCGGUUa----GCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 37467 0.7 0.613724
Target:  5'- uGGCugGcCAcGCCGccGUuggcugacccaccccCGGCGGUGAGCa -3'
miRNA:   3'- -UCGugCuGU-CGGU--UA---------------GCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 64620 0.7 0.6192
Target:  5'- gAGCGCGACGGgcagcagcgcccaCCAAUCGaGCGuccacGAGUa -3'
miRNA:   3'- -UCGUGCUGUC-------------GGUUAGC-CGCua---CUCG- -5'
23328 3' -54.1 NC_005259.1 + 30422 0.7 0.620296
Target:  5'- aAGUACGugAGgCAG-C-GCGAUGAGCc -3'
miRNA:   3'- -UCGUGCugUCgGUUaGcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 21173 0.69 0.631256
Target:  5'- --gACGGCAGUCGggucAUCGGCGc-GAGCa -3'
miRNA:   3'- ucgUGCUGUCGGU----UAGCCGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 55367 0.69 0.638929
Target:  5'- gAGCgACGGCAGCCGugaucAgugcccacguuuccUCGGUGGUGAuGCc -3'
miRNA:   3'- -UCG-UGCUGUCGGU-----U--------------AGCCGCUACU-CG- -5'
23328 3' -54.1 NC_005259.1 + 47707 0.69 0.642217
Target:  5'- uGCGCGGCAguGCCuuGUCGGCGAa---- -3'
miRNA:   3'- uCGUGCUGU--CGGu-UAGCCGCUacucg -5'
23328 3' -54.1 NC_005259.1 + 52612 0.69 0.6466
Target:  5'- cGUACGGUGGCCAacuacgucgagcugcGUCGGCuguggggcgaGGUGAGCg -3'
miRNA:   3'- uCGUGCUGUCGGU---------------UAGCCG----------CUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 6528 0.69 0.664102
Target:  5'- cGCGCGACaaccGGCCucggggCGaGCGGUGaAGCu -3'
miRNA:   3'- uCGUGCUG----UCGGuua---GC-CGCUAC-UCG- -5'
23328 3' -54.1 NC_005259.1 + 50123 0.69 0.664102
Target:  5'- cGCACgGGCAccGCCAcacgcgauugGUUGGCGAuccggcgcgUGAGCg -3'
miRNA:   3'- uCGUG-CUGU--CGGU----------UAGCCGCU---------ACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.