Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23328 | 3' | -54.1 | NC_005259.1 | + | 8523 | 1.12 | 0.001053 |
Target: 5'- gAGCACGACAGCCAAUCGGCGAUGAGCu -3' miRNA: 3'- -UCGUGCUGUCGGUUAGCCGCUACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 49635 | 0.82 | 0.126712 |
Target: 5'- --gGCGGCAGCCGcGUCGGCGAUG-GCg -3' miRNA: 3'- ucgUGCUGUCGGU-UAGCCGCUACuCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 43937 | 0.81 | 0.137707 |
Target: 5'- cGCGCuacuGACAGC--GUCGGCGAUGGGCg -3' miRNA: 3'- uCGUG----CUGUCGguUAGCCGCUACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 27142 | 0.81 | 0.141563 |
Target: 5'- gAGgGCGGCugcgguguuggGGCCAacgaugccGUCGGCGAUGAGCa -3' miRNA: 3'- -UCgUGCUG-----------UCGGU--------UAGCCGCUACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 2246 | 0.8 | 0.176122 |
Target: 5'- --gGCGACAGCCGGUaCGGCGAcGAGUu -3' miRNA: 3'- ucgUGCUGUCGGUUA-GCCGCUaCUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 8367 | 0.77 | 0.248281 |
Target: 5'- cGCucgGCGGCGGCCucggcAUCGGCGA-GAGCc -3' miRNA: 3'- uCG---UGCUGUCGGu----UAGCCGCUaCUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 4318 | 0.76 | 0.28197 |
Target: 5'- gAGCGCGACcaaccucguGCCGGaccucgucgCGGUGAUGAGCg -3' miRNA: 3'- -UCGUGCUGu--------CGGUUa--------GCCGCUACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 43316 | 0.75 | 0.327056 |
Target: 5'- uGGCuGCGuuGGCCAccgccUUGGCGAUGGGCa -3' miRNA: 3'- -UCG-UGCugUCGGUu----AGCCGCUACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 3079 | 0.75 | 0.33507 |
Target: 5'- aGGC-CGACaagagAGCCGcgCaGCGAUGAGCg -3' miRNA: 3'- -UCGuGCUG-----UCGGUuaGcCGCUACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 20496 | 0.74 | 0.377267 |
Target: 5'- cGCcCGGCAGCUcAUCGGCGAcggugucccGAGCa -3' miRNA: 3'- uCGuGCUGUCGGuUAGCCGCUa--------CUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 11052 | 0.73 | 0.404246 |
Target: 5'- cGCAUGACGuGCCGAUCGGCuc--AGCg -3' miRNA: 3'- uCGUGCUGU-CGGUUAGCCGcuacUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 39765 | 0.73 | 0.442053 |
Target: 5'- cAGCAgCGGCAGCCugcugcugguGAUCGGUGcgccGAGCu -3' miRNA: 3'- -UCGU-GCUGUCGG----------UUAGCCGCua--CUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 12361 | 0.73 | 0.442053 |
Target: 5'- cGGCcucGCGACcgAGgUAGUCGGCGA-GAGCg -3' miRNA: 3'- -UCG---UGCUG--UCgGUUAGCCGCUaCUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 62870 | 0.73 | 0.451814 |
Target: 5'- cGGCGCGAgguaGGCCGcUCGGUcauUGAGCg -3' miRNA: 3'- -UCGUGCUg---UCGGUuAGCCGcu-ACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 63111 | 0.72 | 0.461691 |
Target: 5'- -uCACGGCAGCCGucGagGGUGGUGAGg -3' miRNA: 3'- ucGUGCUGUCGGU--UagCCGCUACUCg -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 58965 | 0.72 | 0.461691 |
Target: 5'- cAGCAggucgGGCAGCUcGUCGGCGAcggcGAGCu -3' miRNA: 3'- -UCGUg----CUGUCGGuUAGCCGCUa---CUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 42559 | 0.72 | 0.48178 |
Target: 5'- cAGCucgGCGAgCAGCCGGUCgucaucgauaGGCG-UGAGCg -3' miRNA: 3'- -UCG---UGCU-GUCGGUUAG----------CCGCuACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 60203 | 0.72 | 0.491982 |
Target: 5'- gGGcCACGAUcucGCCGaucucGUCGGCGcUGAGCu -3' miRNA: 3'- -UC-GUGCUGu--CGGU-----UAGCCGCuACUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 46390 | 0.72 | 0.502283 |
Target: 5'- -uCACG-CAGCCGcgCGGUGA-GGGCa -3' miRNA: 3'- ucGUGCuGUCGGUuaGCCGCUaCUCG- -5' |
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23328 | 3' | -54.1 | NC_005259.1 | + | 59422 | 0.72 | 0.502283 |
Target: 5'- uGGCGuCGGCGGCCAugaagaaCGGCGGUucguuacgGGGCg -3' miRNA: 3'- -UCGU-GCUGUCGGUua-----GCCGCUA--------CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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