miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 964 0.67 0.789846
Target:  5'- cGCGCaACGGCuCAA-CGGCGAcGAGa -3'
miRNA:   3'- uCGUGcUGUCG-GUUaGCCGCUaCUCg -5'
23328 3' -54.1 NC_005259.1 + 1287 0.68 0.685868
Target:  5'- uGCACGACcccgaGGUCGAgcucuacgCGGUcGUGAGCg -3'
miRNA:   3'- uCGUGCUG-----UCGGUUa-------GCCGcUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 1936 0.7 0.565829
Target:  5'- uGC-CGACGGuCCAcacCGGCG-UGAGCg -3'
miRNA:   3'- uCGuGCUGUC-GGUua-GCCGCuACUCG- -5'
23328 3' -54.1 NC_005259.1 + 2147 0.7 0.609346
Target:  5'- cGCACGGugcUGGCCAG-CGGCGucGAGCc -3'
miRNA:   3'- uCGUGCU---GUCGGUUaGCCGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 2246 0.8 0.176122
Target:  5'- --gGCGACAGCCGGUaCGGCGAcGAGUu -3'
miRNA:   3'- ucgUGCUGUCGGUUA-GCCGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 3079 0.75 0.33507
Target:  5'- aGGC-CGACaagagAGCCGcgCaGCGAUGAGCg -3'
miRNA:   3'- -UCGuGCUG-----UCGGUuaGcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 3531 0.68 0.718106
Target:  5'- gGGCACGACaccgaccacAGCCAGaUCcGCGAgcuugccGAGCu -3'
miRNA:   3'- -UCGUGCUG---------UCGGUU-AGcCGCUa------CUCG- -5'
23328 3' -54.1 NC_005259.1 + 4121 0.66 0.809042
Target:  5'- cGGCcuCGACguGGCCAagaccGUCGGCGAguucaagGAcGCg -3'
miRNA:   3'- -UCGu-GCUG--UCGGU-----UAGCCGCUa------CU-CG- -5'
23328 3' -54.1 NC_005259.1 + 4318 0.76 0.28197
Target:  5'- gAGCGCGACcaaccucguGCCGGaccucgucgCGGUGAUGAGCg -3'
miRNA:   3'- -UCGUGCUGu--------CGGUUa--------GCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 5077 0.66 0.81837
Target:  5'- cGGguCGACgGGCCGGUgucacCGGCGAUcuGCg -3'
miRNA:   3'- -UCguGCUG-UCGGUUA-----GCCGCUAcuCG- -5'
23328 3' -54.1 NC_005259.1 + 5726 0.67 0.788868
Target:  5'- cGgACGGCGGCCAuucUCGcggccaaGCGgcGAGCu -3'
miRNA:   3'- uCgUGCUGUCGGUu--AGC-------CGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 6380 0.66 0.836433
Target:  5'- gGGCGCGAUGGUCAacGUCauuuucgaGGCGGUGcccugauguGGCc -3'
miRNA:   3'- -UCGUGCUGUCGGU--UAG--------CCGCUAC---------UCG- -5'
23328 3' -54.1 NC_005259.1 + 6528 0.69 0.664102
Target:  5'- cGCGCGACaaccGGCCucggggCGaGCGGUGaAGCu -3'
miRNA:   3'- uCGUGCUG----UCGGuua---GC-CGCUAC-UCG- -5'
23328 3' -54.1 NC_005259.1 + 7406 0.67 0.759855
Target:  5'- cGCaACGGCAuccucgucGCC-GUCGGCGGUGcccGCg -3'
miRNA:   3'- uCG-UGCUGU--------CGGuUAGCCGCUACu--CG- -5'
23328 3' -54.1 NC_005259.1 + 8367 0.77 0.248281
Target:  5'- cGCucgGCGGCGGCCucggcAUCGGCGA-GAGCc -3'
miRNA:   3'- uCG---UGCUGUCGGu----UAGCCGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 8523 1.12 0.001053
Target:  5'- gAGCACGACAGCCAAUCGGCGAUGAGCu -3'
miRNA:   3'- -UCGUGCUGUCGGUUAGCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 8757 0.7 0.609346
Target:  5'- gAGguCGAggcccuUGGCCAGcgcggCGGUGAUGAGCu -3'
miRNA:   3'- -UCguGCU------GUCGGUUa----GCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 11052 0.73 0.404246
Target:  5'- cGCAUGACGuGCCGAUCGGCuc--AGCg -3'
miRNA:   3'- uCGUGCUGU-CGGUUAGCCGcuacUCG- -5'
23328 3' -54.1 NC_005259.1 + 12361 0.73 0.442053
Target:  5'- cGGCcucGCGACcgAGgUAGUCGGCGA-GAGCg -3'
miRNA:   3'- -UCG---UGCUG--UCgGUUAGCCGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 13294 0.67 0.779997
Target:  5'- aAGUauugACGugAGCCAGUgCGGCG--GGGUa -3'
miRNA:   3'- -UCG----UGCugUCGGUUA-GCCGCuaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.