miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 68749 0.66 0.809042
Target:  5'- gAGCucgaccccgGCGACcucGCC-AUCGGUGuacuUGAGCa -3'
miRNA:   3'- -UCG---------UGCUGu--CGGuUAGCCGCu---ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 67446 0.7 0.598415
Target:  5'- gAGCGCGuCGgggauGCCcuuuUCGGCGAUG-GCg -3'
miRNA:   3'- -UCGUGCuGU-----CGGuu--AGCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 67006 0.66 0.809042
Target:  5'- cGCACGACAcGCguGUaggucuUGGCGGUGGuGUa -3'
miRNA:   3'- uCGUGCUGU-CGguUA------GCCGCUACU-CG- -5'
23328 3' -54.1 NC_005259.1 + 66921 0.66 0.799531
Target:  5'- cAGCGCGcGguGCuCGAcCGG-GGUGAGCg -3'
miRNA:   3'- -UCGUGC-UguCG-GUUaGCCgCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 66645 0.7 0.565829
Target:  5'- cGCuCGgauuGCuGCCGGUCGGCGGUGcuGCg -3'
miRNA:   3'- uCGuGC----UGuCGGUUAGCCGCUACu-CG- -5'
23328 3' -54.1 NC_005259.1 + 65984 0.68 0.69668
Target:  5'- aGGCGCGccgaGCAGCCGcUCGacGUGGUGcGCa -3'
miRNA:   3'- -UCGUGC----UGUCGGUuAGC--CGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 65876 0.71 0.512676
Target:  5'- cGGUggGGCGGUCAAUCGGCGGgacGGUc -3'
miRNA:   3'- -UCGugCUGUCGGUUAGCCGCUac-UCG- -5'
23328 3' -54.1 NC_005259.1 + 64847 0.66 0.803357
Target:  5'- uGCugGCGAUGGCCAcccugaucgGUCGGagaucuuguccgaguUGAUGAGCc -3'
miRNA:   3'- uCG--UGCUGUCGGU---------UAGCC---------------GCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 64789 0.67 0.756787
Target:  5'- cGCuGCGACuggcugugugccucGGCC--UCGGCGGcaaUGAGCg -3'
miRNA:   3'- uCG-UGCUG--------------UCGGuuAGCCGCU---ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 64620 0.7 0.6192
Target:  5'- gAGCGCGACGGgcagcagcgcccaCCAAUCGaGCGuccacGAGUa -3'
miRNA:   3'- -UCGUGCUGUC-------------GGUUAGC-CGCua---CUCG- -5'
23328 3' -54.1 NC_005259.1 + 64132 0.68 0.736057
Target:  5'- cGCcugacCGAgCGGCCcGUCGGCGAUGcccuugacguagucGGCg -3'
miRNA:   3'- uCGu----GCU-GUCGGuUAGCCGCUAC--------------UCG- -5'
23328 3' -54.1 NC_005259.1 + 63552 0.66 0.799531
Target:  5'- uGCuCGGCGGCCAccgacGCGAcGAGCg -3'
miRNA:   3'- uCGuGCUGUCGGUuagc-CGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 63111 0.72 0.461691
Target:  5'- -uCACGGCAGCCGucGagGGUGGUGAGg -3'
miRNA:   3'- ucGUGCUGUCGGU--UagCCGCUACUCg -5'
23328 3' -54.1 NC_005259.1 + 63038 0.67 0.789846
Target:  5'- gAGCugacuCGACAGCagCGGUgCGuacaucGCGAUGAGCu -3'
miRNA:   3'- -UCGu----GCUGUCG--GUUA-GC------CGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 62870 0.73 0.451814
Target:  5'- cGGCGCGAgguaGGCCGcUCGGUcauUGAGCg -3'
miRNA:   3'- -UCGUGCUg---UCGGUuAGCCGcu-ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 61569 0.69 0.675005
Target:  5'- cGGCAcCGGCAGUUgagGAUCucauGCGGUGGGCc -3'
miRNA:   3'- -UCGU-GCUGUCGG---UUAGc---CGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 60754 0.7 0.576649
Target:  5'- uGCAguGCAGUCGGcUCGGCGAgguUGGGCu -3'
miRNA:   3'- uCGUgcUGUCGGUU-AGCCGCU---ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 60569 0.66 0.81837
Target:  5'- uGC-CGACGGUCAGgcggcccaCGGCGAgucGGGUg -3'
miRNA:   3'- uCGuGCUGUCGGUUa-------GCCGCUa--CUCG- -5'
23328 3' -54.1 NC_005259.1 + 60276 0.67 0.789846
Target:  5'- cAGCGCugccgGGCGGCCAucGUCGuCGGUGcGGCc -3'
miRNA:   3'- -UCGUG-----CUGUCGGU--UAGCcGCUAC-UCG- -5'
23328 3' -54.1 NC_005259.1 + 60203 0.72 0.491982
Target:  5'- gGGcCACGAUcucGCCGaucucGUCGGCGcUGAGCu -3'
miRNA:   3'- -UC-GUGCUGu--CGGU-----UAGCCGCuACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.