miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 58762 0.66 0.839946
Target:  5'- cGGCgaACGACGcugcgggcgcugugcGCCGGUCgaGGCGGUGAuuGCc -3'
miRNA:   3'- -UCG--UGCUGU---------------CGGUUAG--CCGCUACU--CG- -5'
23328 3' -54.1 NC_005259.1 + 12361 0.73 0.442053
Target:  5'- cGGCcucGCGACcgAGgUAGUCGGCGA-GAGCg -3'
miRNA:   3'- -UCG---UGCUG--UCgGUUAGCCGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 62870 0.73 0.451814
Target:  5'- cGGCGCGAgguaGGCCGcUCGGUcauUGAGCg -3'
miRNA:   3'- -UCGUGCUg---UCGGUuAGCCGcu-ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 63111 0.72 0.461691
Target:  5'- -uCACGGCAGCCGucGagGGUGGUGAGg -3'
miRNA:   3'- ucGUGCUGUCGGU--UagCCGCUACUCg -5'
23328 3' -54.1 NC_005259.1 + 58965 0.72 0.461691
Target:  5'- cAGCAggucgGGCAGCUcGUCGGCGAcggcGAGCu -3'
miRNA:   3'- -UCGUg----CUGUCGGuUAGCCGCUa---CUCG- -5'
23328 3' -54.1 NC_005259.1 + 42559 0.72 0.48178
Target:  5'- cAGCucgGCGAgCAGCCGGUCgucaucgauaGGCG-UGAGCg -3'
miRNA:   3'- -UCG---UGCU-GUCGGUUAG----------CCGCuACUCG- -5'
23328 3' -54.1 NC_005259.1 + 60203 0.72 0.491982
Target:  5'- gGGcCACGAUcucGCCGaucucGUCGGCGcUGAGCu -3'
miRNA:   3'- -UC-GUGCUGu--CGGU-----UAGCCGCuACUCG- -5'
23328 3' -54.1 NC_005259.1 + 46390 0.72 0.502283
Target:  5'- -uCACG-CAGCCGcgCGGUGA-GGGCa -3'
miRNA:   3'- ucGUGCuGUCGGUuaGCCGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 59422 0.72 0.502283
Target:  5'- uGGCGuCGGCGGCCAugaagaaCGGCGGUucguuacgGGGCg -3'
miRNA:   3'- -UCGU-GCUGUCGGUua-----GCCGCUA--------CUCG- -5'
23328 3' -54.1 NC_005259.1 + 39765 0.73 0.442053
Target:  5'- cAGCAgCGGCAGCCugcugcugguGAUCGGUGcgccGAGCu -3'
miRNA:   3'- -UCGU-GCUGUCGG----------UUAGCCGCua--CUCG- -5'
23328 3' -54.1 NC_005259.1 + 11052 0.73 0.404246
Target:  5'- cGCAUGACGuGCCGAUCGGCuc--AGCg -3'
miRNA:   3'- uCGUGCUGU-CGGUUAGCCGcuacUCG- -5'
23328 3' -54.1 NC_005259.1 + 20496 0.74 0.377267
Target:  5'- cGCcCGGCAGCUcAUCGGCGAcggugucccGAGCa -3'
miRNA:   3'- uCGuGCUGUCGGuUAGCCGCUa--------CUCG- -5'
23328 3' -54.1 NC_005259.1 + 49635 0.82 0.126712
Target:  5'- --gGCGGCAGCCGcGUCGGCGAUG-GCg -3'
miRNA:   3'- ucgUGCUGUCGGU-UAGCCGCUACuCG- -5'
23328 3' -54.1 NC_005259.1 + 43937 0.81 0.137707
Target:  5'- cGCGCuacuGACAGC--GUCGGCGAUGGGCg -3'
miRNA:   3'- uCGUG----CUGUCGguUAGCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 27142 0.81 0.141563
Target:  5'- gAGgGCGGCugcgguguuggGGCCAacgaugccGUCGGCGAUGAGCa -3'
miRNA:   3'- -UCgUGCUG-----------UCGGU--------UAGCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 2246 0.8 0.176122
Target:  5'- --gGCGACAGCCGGUaCGGCGAcGAGUu -3'
miRNA:   3'- ucgUGCUGUCGGUUA-GCCGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 8367 0.77 0.248281
Target:  5'- cGCucgGCGGCGGCCucggcAUCGGCGA-GAGCc -3'
miRNA:   3'- uCG---UGCUGUCGGu----UAGCCGCUaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 4318 0.76 0.28197
Target:  5'- gAGCGCGACcaaccucguGCCGGaccucgucgCGGUGAUGAGCg -3'
miRNA:   3'- -UCGUGCUGu--------CGGUUa--------GCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 43316 0.75 0.327056
Target:  5'- uGGCuGCGuuGGCCAccgccUUGGCGAUGGGCa -3'
miRNA:   3'- -UCG-UGCugUCGGUu----AGCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 3079 0.75 0.33507
Target:  5'- aGGC-CGACaagagAGCCGcgCaGCGAUGAGCg -3'
miRNA:   3'- -UCGuGCUG-----UCGGUuaGcCGCUACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.