miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 3' -54.1 NC_005259.1 + 14029 0.71 0.523158
Target:  5'- cGGCACGaucaucgagcgGCAGCgCAucGUCGGCGAcGAGa -3'
miRNA:   3'- -UCGUGC-----------UGUCG-GU--UAGCCGCUaCUCg -5'
23328 3' -54.1 NC_005259.1 + 16500 0.67 0.769997
Target:  5'- cGCGCGcAUGGCCGAgagcgaGGCGcugcGAGCg -3'
miRNA:   3'- uCGUGC-UGUCGGUUag----CCGCua--CUCG- -5'
23328 3' -54.1 NC_005259.1 + 16653 0.66 0.80526
Target:  5'- cGC-CGACAauuucggggugaccGCCucgauguGGUCGGCGAuccUGGGCa -3'
miRNA:   3'- uCGuGCUGU--------------CGG-------UUAGCCGCU---ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 18759 0.67 0.779997
Target:  5'- uGCuCGACAuggccuGCCAcAUC-GCGGUGGGCa -3'
miRNA:   3'- uCGuGCUGU------CGGU-UAGcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 19220 0.68 0.685868
Target:  5'- cGGCgACGugGGacaCCgAGUCGGCGAUGAu- -3'
miRNA:   3'- -UCG-UGCugUC---GG-UUAGCCGCUACUcg -5'
23328 3' -54.1 NC_005259.1 + 19942 0.68 0.704211
Target:  5'- aAGCACGcgugugcguccgcaACGGCgGcUCGGCGGugUGGGUg -3'
miRNA:   3'- -UCGUGC--------------UGUCGgUuAGCCGCU--ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 20496 0.74 0.377267
Target:  5'- cGCcCGGCAGCUcAUCGGCGAcggugucccGAGCa -3'
miRNA:   3'- uCGuGCUGUCGGuUAGCCGCUa--------CUCG- -5'
23328 3' -54.1 NC_005259.1 + 21173 0.69 0.631256
Target:  5'- --gACGGCAGUCGggucAUCGGCGc-GAGCa -3'
miRNA:   3'- ucgUGCUGUCGGU----UAGCCGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 23615 0.68 0.739195
Target:  5'- cGCgugGCGGCAGCCAGaCGGCucGGUGuGGUu -3'
miRNA:   3'- uCG---UGCUGUCGGUUaGCCG--CUAC-UCG- -5'
23328 3' -54.1 NC_005259.1 + 24536 0.66 0.799531
Target:  5'- uGGCucGCGuucGCAGUCcaGAUCGGCGGgguguacucgUGGGCa -3'
miRNA:   3'- -UCG--UGC---UGUCGG--UUAGCCGCU----------ACUCG- -5'
23328 3' -54.1 NC_005259.1 + 26343 0.67 0.756787
Target:  5'- uAGCACGcCcucgGGCCGagcugcgcguagauGUCGGUGgcGAGCc -3'
miRNA:   3'- -UCGUGCuG----UCGGU--------------UAGCCGCuaCUCG- -5'
23328 3' -54.1 NC_005259.1 + 26798 0.66 0.809042
Target:  5'- cAGCGCcGCcgcccgguuGGCCGGUacCGGCGGUGGuGCc -3'
miRNA:   3'- -UCGUGcUG---------UCGGUUA--GCCGCUACU-CG- -5'
23328 3' -54.1 NC_005259.1 + 27092 0.67 0.769997
Target:  5'- uGCgGCGGCuGCCAu---GCGGUGGGCu -3'
miRNA:   3'- uCG-UGCUGuCGGUuagcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 27142 0.81 0.141563
Target:  5'- gAGgGCGGCugcgguguuggGGCCAacgaugccGUCGGCGAUGAGCa -3'
miRNA:   3'- -UCgUGCUG-----------UCGGU--------UAGCCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 27379 0.66 0.809042
Target:  5'- cGGCACGGugaCCGG-CGGCGGUGucGGCa -3'
miRNA:   3'- -UCGUGCUgucGGUUaGCCGCUAC--UCG- -5'
23328 3' -54.1 NC_005259.1 + 28111 0.66 0.809042
Target:  5'- gGGCcgguCGAUugaccguucguGCCGAcguaGGCGAUGAGCu -3'
miRNA:   3'- -UCGu---GCUGu----------CGGUUag--CCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 28989 0.68 0.69668
Target:  5'- gAGCGCccgcuACGGCCAcgagAUCGGCGAau-GCg -3'
miRNA:   3'- -UCGUGc----UGUCGGU----UAGCCGCUacuCG- -5'
23328 3' -54.1 NC_005259.1 + 29062 0.67 0.79374
Target:  5'- gAGCGCGguaucggcccgaucuGCGcuGCCAAggccgGGUGGUGAGCu -3'
miRNA:   3'- -UCGUGC---------------UGU--CGGUUag---CCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 30422 0.7 0.620296
Target:  5'- aAGUACGugAGgCAG-C-GCGAUGAGCc -3'
miRNA:   3'- -UCGUGCugUCgGUUaGcCGCUACUCG- -5'
23328 3' -54.1 NC_005259.1 + 31170 0.68 0.685868
Target:  5'- gAGCuCGcCcuugAGCCAGUCGGCGAgGAuGCc -3'
miRNA:   3'- -UCGuGCuG----UCGGUUAGCCGCUaCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.