miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 58816 0.67 0.319641
Target:  5'- gGGCUC--GCGCUGCucGGCACCcucGCCGCc -3'
miRNA:   3'- aUCGGGuaCGCGGCG--UCGUGG---CGGUG- -5'
23328 5' -62.5 NC_005259.1 + 12316 0.67 0.319641
Target:  5'- -uGUCgGUGCGCaccgccgccaGCucacGCACCGCCGCc -3'
miRNA:   3'- auCGGgUACGCGg---------CGu---CGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 46322 0.67 0.304834
Target:  5'- cGGCCCcgaggGUcGCGUCGC-GCACCGCUu- -3'
miRNA:   3'- aUCGGG-----UA-CGCGGCGuCGUGGCGGug -5'
23328 5' -62.5 NC_005259.1 + 41537 0.67 0.315143
Target:  5'- aAGCUCGU-CGUCGCAGUcgucgcgagcguuacACCGCCGg -3'
miRNA:   3'- aUCGGGUAcGCGGCGUCG---------------UGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 52584 0.67 0.31217
Target:  5'- cGGCCUGaGCGUCGCcgAGCACCagcGCCGu -3'
miRNA:   3'- aUCGGGUaCGCGGCG--UCGUGG---CGGUg -5'
23328 5' -62.5 NC_005259.1 + 10132 0.67 0.31217
Target:  5'- cAGCCCAcGCGCgCGCc-CGCCGuUCGCa -3'
miRNA:   3'- aUCGGGUaCGCG-GCGucGUGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 38027 0.68 0.270137
Target:  5'- aGGCCC--GCGuuGguGUACCcgGCCACc -3'
miRNA:   3'- aUCGGGuaCGCggCguCGUGG--CGGUG- -5'
23328 5' -62.5 NC_005259.1 + 44583 0.68 0.276813
Target:  5'- aGGCUCAugauguucggcaUGC-CCGCAGCGCCcuuagcguuGCCGCc -3'
miRNA:   3'- aUCGGGU------------ACGcGGCGUCGUGG---------CGGUG- -5'
23328 5' -62.5 NC_005259.1 + 18545 0.68 0.276813
Target:  5'- gAGCCCGccgacgaaccaU-CGCCGUA-CGCCGCCGCc -3'
miRNA:   3'- aUCGGGU-----------AcGCGGCGUcGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 36626 0.68 0.282933
Target:  5'- -cGCCC--GCGCCGCccgcaaGGCccgcgaucagcgaGCCGCCGCc -3'
miRNA:   3'- auCGGGuaCGCGGCG------UCG-------------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 3124 0.68 0.28362
Target:  5'- cGGCaCCGUGgGCagcgGaCGGCACCGCC-Cg -3'
miRNA:   3'- aUCG-GGUACgCGg---C-GUCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 16438 0.68 0.28362
Target:  5'- cGGCCCAaaccggGCaCCGuCGGCAucgguaccCCGCCGCa -3'
miRNA:   3'- aUCGGGUa-----CGcGGC-GUCGU--------GGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 67975 0.68 0.263591
Target:  5'- -cGCgCA-GCGgCGUGGcCACCGCCGCg -3'
miRNA:   3'- auCGgGUaCGCgGCGUC-GUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 31236 0.68 0.263591
Target:  5'- gAGaCCAUuggGCGCgGCGGUGCCGCCcCa -3'
miRNA:   3'- aUCgGGUA---CGCGgCGUCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 46354 0.68 0.263591
Target:  5'- aGGUUC-UGgGCCGCgauGGCACCGCC-Cg -3'
miRNA:   3'- aUCGGGuACgCGGCG---UCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 46745 0.68 0.262944
Target:  5'- -uGCCCGcgauggcUGCGCCGaCAccuGCGCCgacaGCCGCg -3'
miRNA:   3'- auCGGGU-------ACGCGGC-GU---CGUGG----CGGUG- -5'
23328 5' -62.5 NC_005259.1 + 22182 0.68 0.259086
Target:  5'- -cGCCCAucgugguUGCGaCCuuGCAgacguuggccaccgcGCACCGCCGCg -3'
miRNA:   3'- auCGGGU-------ACGC-GG--CGU---------------CGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 24848 0.68 0.250887
Target:  5'- cAGUCCGUGCGCuaCGCcgaGGC-CCGCCuCg -3'
miRNA:   3'- aUCGGGUACGCG--GCG---UCGuGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 60487 0.68 0.250887
Target:  5'- -cGCaCCA-GCGCC-CAGCACgCGCCGg -3'
miRNA:   3'- auCG-GGUaCGCGGcGUCGUG-GCGGUg -5'
23328 5' -62.5 NC_005259.1 + 18613 0.68 0.250887
Target:  5'- cAGUCCGcacagcggUGUGCCGC-GCAUCGCCcCg -3'
miRNA:   3'- aUCGGGU--------ACGCGGCGuCGUGGCGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.