miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 41472 0.66 0.36725
Target:  5'- cGGCCCGUGaCGCCGUcgAGCA-CGaCCuCg -3'
miRNA:   3'- aUCGGGUAC-GCGGCG--UCGUgGC-GGuG- -5'
23328 5' -62.5 NC_005259.1 + 40074 0.66 0.358986
Target:  5'- --aCCCAUGgGCCGaCGcGCACCGagCGCg -3'
miRNA:   3'- aucGGGUACgCGGC-GU-CGUGGCg-GUG- -5'
23328 5' -62.5 NC_005259.1 + 35858 0.66 0.34285
Target:  5'- aGGUCCGccgccGCGuccaCCGCAGcCGCCGCCGa -3'
miRNA:   3'- aUCGGGUa----CGC----GGCGUC-GUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 4246 0.66 0.36725
Target:  5'- -cGCCCAcgugccucgacUGCgaggacaacggGCgGCuGCGCUGCCACg -3'
miRNA:   3'- auCGGGU-----------ACG-----------CGgCGuCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 26640 0.67 0.319641
Target:  5'- aUGGCCUggcGUGCGCUcgGCAGguUCGgCGCa -3'
miRNA:   3'- -AUCGGG---UACGCGG--CGUCguGGCgGUG- -5'
23328 5' -62.5 NC_005259.1 + 11420 0.67 0.307752
Target:  5'- gUGGCCgGUGCaacggggaugcuuggGCCGCu-CGCUGCCGCc -3'
miRNA:   3'- -AUCGGgUACG---------------CGGCGucGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 35505 0.67 0.309956
Target:  5'- uUGGCCCcguUGcCGCCGCcGCcgggcacaccgcccGCCGUCGCc -3'
miRNA:   3'- -AUCGGGu--AC-GCGGCGuCG--------------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 28635 0.67 0.31217
Target:  5'- aGGCCaCcgGUGCCGa--CACCGCCGa -3'
miRNA:   3'- aUCGG-GuaCGCGGCgucGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 10132 0.67 0.31217
Target:  5'- cAGCCCAcGCGCgCGCc-CGCCGuUCGCa -3'
miRNA:   3'- aUCGGGUaCGCG-GCGucGUGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 41537 0.67 0.315143
Target:  5'- aAGCUCGU-CGUCGCAGUcgucgcgagcguuacACCGCCGg -3'
miRNA:   3'- aUCGGGUAcGCGGCGUCG---------------UGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 12316 0.67 0.319641
Target:  5'- -uGUCgGUGCGCaccgccgccaGCucacGCACCGCCGCc -3'
miRNA:   3'- auCGGgUACGCGg---------CGu---CGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 22455 0.67 0.327244
Target:  5'- cUGGCUaccuCGUGCGCCcgcGCGGUcugACCGuCCGCa -3'
miRNA:   3'- -AUCGG----GUACGCGG---CGUCG---UGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 53229 0.67 0.287767
Target:  5'- -cGCCCugcuugagguucGCGCCGCcGaCACCGUCGCc -3'
miRNA:   3'- auCGGGua----------CGCGGCGuC-GUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 36712 0.67 0.290559
Target:  5'- gAGCUCGUGCcgcucgacccGCCGC-GC-CCGCCGg -3'
miRNA:   3'- aUCGGGUACG----------CGGCGuCGuGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 23896 0.67 0.290559
Target:  5'- -cGCCCGaGcCGCCGC-GC-CCGCCGu -3'
miRNA:   3'- auCGGGUaC-GCGGCGuCGuGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 38944 0.67 0.29763
Target:  5'- -uGCCCG-GUGCCGCu--GCCGCCGa -3'
miRNA:   3'- auCGGGUaCGCGGCGucgUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 58699 0.67 0.29763
Target:  5'- cGGCUCGU-CGCCGC--CGCCGUCACc -3'
miRNA:   3'- aUCGGGUAcGCGGCGucGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 37235 0.67 0.304107
Target:  5'- cUGGCCCGUGCcggauuggcuGCCGCcGUugccaggcuugagGCCGCCcgGCa -3'
miRNA:   3'- -AUCGGGUACG----------CGGCGuCG-------------UGGCGG--UG- -5'
23328 5' -62.5 NC_005259.1 + 37370 0.67 0.304834
Target:  5'- gUAGCUCAcGC-CCuCGGCACCGCC-Cg -3'
miRNA:   3'- -AUCGGGUaCGcGGcGUCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 52332 0.67 0.327244
Target:  5'- gUGGCUCGgacaCGCCGguGUGCCGCUg- -3'
miRNA:   3'- -AUCGGGUac--GCGGCguCGUGGCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.