miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 18613 0.68 0.250887
Target:  5'- cAGUCCGcacagcggUGUGCCGC-GCAUCGCCcCg -3'
miRNA:   3'- aUCGGGU--------ACGCGGCGuCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 22182 0.68 0.259086
Target:  5'- -cGCCCAucgugguUGCGaCCuuGCAgacguuggccaccgcGCACCGCCGCg -3'
miRNA:   3'- auCGGGU-------ACGC-GG--CGU---------------CGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 22455 0.67 0.327244
Target:  5'- cUGGCUaccuCGUGCGCCcgcGCGGUcugACCGuCCGCa -3'
miRNA:   3'- -AUCGG----GUACGCGG---CGUCG---UGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 22739 0.69 0.220773
Target:  5'- cAGCCCGUauacgagGCGuaCCGaaaCGGCACCGCCAa -3'
miRNA:   3'- aUCGGGUA-------CGC--GGC---GUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 23417 0.66 0.34285
Target:  5'- aAGaCUCAUgGCGgCGCaAGCAgcCCGCCACc -3'
miRNA:   3'- aUC-GGGUA-CGCgGCG-UCGU--GGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 23896 0.67 0.290559
Target:  5'- -cGCCCGaGcCGCCGC-GC-CCGCCGu -3'
miRNA:   3'- auCGGGUaC-GCGGCGuCGuGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 24816 0.66 0.375645
Target:  5'- -uGCCCcgGCacGCCGUgcccGCACCGaCCAa -3'
miRNA:   3'- auCGGGuaCG--CGGCGu---CGUGGC-GGUg -5'
23328 5' -62.5 NC_005259.1 + 24848 0.68 0.250887
Target:  5'- cAGUCCGUGCGCuaCGCcgaGGC-CCGCCuCg -3'
miRNA:   3'- aUCGGGUACGCG--GCG---UCGuGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 25055 0.73 0.109882
Target:  5'- gUAGCCCGUuuucaggcaagggugGCGCUGC--CACCGCCGCu -3'
miRNA:   3'- -AUCGGGUA---------------CGCGGCGucGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 26022 0.71 0.166663
Target:  5'- aUGGCCgCAaGCggguugGCCaGCAGCGCCGCCGg -3'
miRNA:   3'- -AUCGG-GUaCG------CGG-CGUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 26058 0.69 0.232782
Target:  5'- uUGG-CCAUGcCGCCGCcgAGCagucccccgagGCCGCCGCc -3'
miRNA:   3'- -AUCgGGUAC-GCGGCG--UCG-----------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 26176 0.68 0.247175
Target:  5'- -cGUCCugugcgaucuccagaAUGUGCgGCAGCaugGCCGCCGCc -3'
miRNA:   3'- auCGGG---------------UACGCGgCGUCG---UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 26407 0.71 0.166663
Target:  5'- -cGCCgG-GCGCgGCGGUGCCGCCGu -3'
miRNA:   3'- auCGGgUaCGCGgCGUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 26640 0.67 0.319641
Target:  5'- aUGGCCUggcGUGCGCUcgGCAGguUCGgCGCa -3'
miRNA:   3'- -AUCGGG---UACGCGG--CGUCguGGCgGUG- -5'
23328 5' -62.5 NC_005259.1 + 26776 0.69 0.215789
Target:  5'- -uGCCgCcgGUGCCucggaacacCAGCGCCGCCGCc -3'
miRNA:   3'- auCGG-GuaCGCGGc--------GUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 27280 0.66 0.34285
Target:  5'- -cGCCUugaGcCGCCGCuGCACgCGCCGg -3'
miRNA:   3'- auCGGGua-C-GCGGCGuCGUG-GCGGUg -5'
23328 5' -62.5 NC_005259.1 + 28635 0.67 0.31217
Target:  5'- aGGCCaCcgGUGCCGa--CACCGCCGa -3'
miRNA:   3'- aUCGG-GuaCGCGGCgucGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 28970 0.7 0.199871
Target:  5'- aGGUCgGUGCcgagGCCGCgAGCGcCCGCUACg -3'
miRNA:   3'- aUCGGgUACG----CGGCG-UCGU-GGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 30303 0.68 0.28362
Target:  5'- gUGGCCCAUuagacggcgaGCGCCGCGucGUACCugaCACg -3'
miRNA:   3'- -AUCGGGUA----------CGCGGCGU--CGUGGcg-GUG- -5'
23328 5' -62.5 NC_005259.1 + 30570 0.67 0.319641
Target:  5'- -cGCCCuUG-GCCGCAGUAgCGCUg- -3'
miRNA:   3'- auCGGGuACgCGGCGUCGUgGCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.