miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 1357 0.7 0.194796
Target:  5'- -uGCCUAcUGgGCCGCucgccGCGCCGcCCGCg -3'
miRNA:   3'- auCGGGU-ACgCGGCGu----CGUGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 3124 0.68 0.28362
Target:  5'- cGGCaCCGUGgGCagcgGaCGGCACCGCC-Cg -3'
miRNA:   3'- aUCG-GGUACgCGg---C-GUCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 3880 0.66 0.375645
Target:  5'- gAGCCCA--CcCCGCAGCGCgacaucguCGCCAUg -3'
miRNA:   3'- aUCGGGUacGcGGCGUCGUG--------GCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 4246 0.66 0.36725
Target:  5'- -cGCCCAcgugccucgacUGCgaggacaacggGCgGCuGCGCUGCCACg -3'
miRNA:   3'- auCGGGU-----------ACG-----------CGgCGuCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 4372 0.66 0.334981
Target:  5'- -cGCCCGUGCcCUGCu-CAUCGCCAa -3'
miRNA:   3'- auCGGGUACGcGGCGucGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 6056 0.7 0.180244
Target:  5'- gAGCUCGUGUGCgCGguGauCGCCGCCGa -3'
miRNA:   3'- aUCGGGUACGCG-GCguC--GUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 6421 0.73 0.121114
Target:  5'- gUGGCCCGaccuCGCCGauguCGGCACCGUCGCg -3'
miRNA:   3'- -AUCGGGUac--GCGGC----GUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 6897 0.69 0.221332
Target:  5'- -cGCCCGcaacgcacGCGCCGCcGCcaucgagaACCGCCGCc -3'
miRNA:   3'- auCGGGUa-------CGCGGCGuCG--------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 7435 0.7 0.194796
Target:  5'- -uGCCC--GCGCCGCauGGCAgCGCCGa -3'
miRNA:   3'- auCGGGuaCGCGGCG--UCGUgGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 8558 1.06 0.000326
Target:  5'- gUAGCCCAUGCGCCGCAGCACCGCCACc -3'
miRNA:   3'- -AUCGGGUACGCGGCGUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 9268 0.69 0.226996
Target:  5'- cGGuCCCGaaacgGCGaguuaUGCGGUGCCGCCACg -3'
miRNA:   3'- aUC-GGGUa----CGCg----GCGUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 9799 0.66 0.36725
Target:  5'- -uGCCCGcucGCGCCacuaccGCccGCACCGCCGg -3'
miRNA:   3'- auCGGGUa--CGCGG------CGu-CGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 10132 0.67 0.31217
Target:  5'- cAGCCCAcGCGCgCGCc-CGCCGuUCGCa -3'
miRNA:   3'- aUCGGGUaCGCG-GCGucGUGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 10874 0.66 0.375645
Target:  5'- cGGCCaa-GCGCaugaGCAGCACCcgGCCcCg -3'
miRNA:   3'- aUCGGguaCGCGg---CGUCGUGG--CGGuG- -5'
23328 5' -62.5 NC_005259.1 + 11420 0.67 0.307752
Target:  5'- gUGGCCgGUGCaacggggaugcuuggGCCGCu-CGCUGCCGCc -3'
miRNA:   3'- -AUCGGgUACG---------------CGGCGucGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 11817 0.69 0.232782
Target:  5'- gAGCUCGU-CGCUGUcGUACUGCCACc -3'
miRNA:   3'- aUCGGGUAcGCGGCGuCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 12316 0.67 0.319641
Target:  5'- -uGUCgGUGCGCaccgccgccaGCucacGCACCGCCGCc -3'
miRNA:   3'- auCGGgUACGCGg---------CGu---CGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 15087 0.7 0.189834
Target:  5'- gAGCCgguCAUGCGCCGCAGgGCCaUCGa -3'
miRNA:   3'- aUCGG---GUACGCGGCGUCgUGGcGGUg -5'
23328 5' -62.5 NC_005259.1 + 16438 0.68 0.28362
Target:  5'- cGGCCCAaaccggGCaCCGuCGGCAucgguaccCCGCCGCa -3'
miRNA:   3'- aUCGGGUa-----CGcGGC-GUCGU--------GGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 18545 0.68 0.276813
Target:  5'- gAGCCCGccgacgaaccaU-CGCCGUA-CGCCGCCGCc -3'
miRNA:   3'- aUCGGGU-----------AcGCGGCGUcGUGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.