miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 8558 1.06 0.000326
Target:  5'- gUAGCCCAUGCGCCGCAGCACCGCCACc -3'
miRNA:   3'- -AUCGGGUACGCGGCGUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 36857 0.8 0.033796
Target:  5'- -cGCCCGcUGCGCCGUugcuGGCACCGcCCGCg -3'
miRNA:   3'- auCGGGU-ACGCGGCG----UCGUGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 63154 0.78 0.04608
Target:  5'- -cGCCCAcguUGagcagcCGCCGCAGCGCCGCCGa -3'
miRNA:   3'- auCGGGU---AC------GCGGCGUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 44982 0.76 0.064451
Target:  5'- gGGCCgGUGCGaCUGCcgaGGCACCGCCGa -3'
miRNA:   3'- aUCGGgUACGC-GGCG---UCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 46916 0.76 0.064451
Target:  5'- cAGUCCgcGUGCGCCGCcgAGCuugcCCGCCGCg -3'
miRNA:   3'- aUCGGG--UACGCGGCG--UCGu---GGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 32918 0.75 0.078251
Target:  5'- cGGCCCGcucggGCGCgGCGGUAUCGUCACc -3'
miRNA:   3'- aUCGGGUa----CGCGgCGUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 45338 0.75 0.078251
Target:  5'- gUGGCC--UGCGCCGCcuGgGCCGCCGCg -3'
miRNA:   3'- -AUCGGguACGCGGCGu-CgUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 35441 0.75 0.089794
Target:  5'- -cGCCCAUaucuguccGCGCCcacCGGCACCGCCAg -3'
miRNA:   3'- auCGGGUA--------CGCGGc--GUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 50115 0.74 0.100177
Target:  5'- -uGCCCGUaCGCaCG-GGCACCGCCACa -3'
miRNA:   3'- auCGGGUAcGCG-GCgUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 55513 0.73 0.108696
Target:  5'- aGGCCCAcagcgaacUGUGCCcaCAGCGCCGCCuCg -3'
miRNA:   3'- aUCGGGU--------ACGCGGc-GUCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 25055 0.73 0.109882
Target:  5'- gUAGCCCGUuuucaggcaagggugGCGCUGC--CACCGCCGCu -3'
miRNA:   3'- -AUCGGGUA---------------CGCGGCGucGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 50386 0.73 0.114748
Target:  5'- cGGCCCAcGUGUCGCGGC-UCGCCGa -3'
miRNA:   3'- aUCGGGUaCGCGGCGUCGuGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 33100 0.73 0.120788
Target:  5'- aGGCCCGcgaGCGUgccuguagggccaCGCGGCAgCCGCCGCg -3'
miRNA:   3'- aUCGGGUa--CGCG-------------GCGUCGU-GGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 32302 0.73 0.121114
Target:  5'- uUGGCCCAgagccuUGaGCCGCAGUGCCcGCCAa -3'
miRNA:   3'- -AUCGGGU------ACgCGGCGUCGUGG-CGGUg -5'
23328 5' -62.5 NC_005259.1 + 6421 0.73 0.121114
Target:  5'- gUGGCCCGaccuCGCCGauguCGGCACCGUCGCg -3'
miRNA:   3'- -AUCGGGUac--GCGGC----GUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 66262 0.73 0.124085
Target:  5'- cGGCCC--GCGCCggGCGGCggcucacGCCGCCACc -3'
miRNA:   3'- aUCGGGuaCGCGG--CGUCG-------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 35198 0.72 0.13849
Target:  5'- cAGCaCCGUGcCGCCugagGCGGCgaggaacgugACCGCCACg -3'
miRNA:   3'- aUCG-GGUAC-GCGG----CGUCG----------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 37641 0.72 0.141851
Target:  5'- -uGCCCgAUGaccgcaccgccgcCGCCGcCGGUGCCGCCACg -3'
miRNA:   3'- auCGGG-UAC-------------GCGGC-GUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 47958 0.72 0.146061
Target:  5'- -uGCCgAUG-GCCGCcGCGCCGcCCGCg -3'
miRNA:   3'- auCGGgUACgCGGCGuCGUGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 45512 0.71 0.154008
Target:  5'- gUGGCCaccGCGCCGguGUugGCCGCCGu -3'
miRNA:   3'- -AUCGGguaCGCGGCguCG--UGGCGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.