miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 48053 0.71 0.162344
Target:  5'- gUGGCCacgGCGg-GUAGCGCCGCCGCg -3'
miRNA:   3'- -AUCGGguaCGCggCGUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 26022 0.71 0.166663
Target:  5'- aUGGCCgCAaGCggguugGCCaGCAGCGCCGCCGg -3'
miRNA:   3'- -AUCGG-GUaCG------CGG-CGUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 26407 0.71 0.166663
Target:  5'- -cGCCgG-GCGCgGCGGUGCCGCCGu -3'
miRNA:   3'- auCGGgUaCGCGgCGUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 6056 0.7 0.180244
Target:  5'- gAGCUCGUGUGCgCGguGauCGCCGCCGa -3'
miRNA:   3'- aUCGGGUACGCG-GCguC--GUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 15087 0.7 0.189834
Target:  5'- gAGCCgguCAUGCGCCGCAGgGCCaUCGa -3'
miRNA:   3'- aUCGG---GUACGCGGCGUCgUGGcGGUg -5'
23328 5' -62.5 NC_005259.1 + 7435 0.7 0.194796
Target:  5'- -uGCCC--GCGCCGCauGGCAgCGCCGa -3'
miRNA:   3'- auCGGGuaCGCGGCG--UCGUgGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 1357 0.7 0.194796
Target:  5'- -uGCCUAcUGgGCCGCucgccGCGCCGcCCGCg -3'
miRNA:   3'- auCGGGU-ACgCGGCGu----CGUGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 28970 0.7 0.199871
Target:  5'- aGGUCgGUGCcgagGCCGCgAGCGcCCGCUACg -3'
miRNA:   3'- aUCGGgUACG----CGGCG-UCGU-GGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 26776 0.69 0.215789
Target:  5'- -uGCCgCcgGUGCCucggaacacCAGCGCCGCCGCc -3'
miRNA:   3'- auCGG-GuaCGCGGc--------GUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 59512 0.69 0.215789
Target:  5'- -cGCCCGgcgaauUGCuguugGCCuuAGCGCCGCCACc -3'
miRNA:   3'- auCGGGU------ACG-----CGGcgUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 37200 0.69 0.215789
Target:  5'- cGGCCCu--UGCCGCcacCGCCGCCGCc -3'
miRNA:   3'- aUCGGGuacGCGGCGuc-GUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 22739 0.69 0.220773
Target:  5'- cAGCCCGUauacgagGCGuaCCGaaaCGGCACCGCCAa -3'
miRNA:   3'- aUCGGGUA-------CGC--GGC---GUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 6897 0.69 0.221332
Target:  5'- -cGCCCGcaacgcacGCGCCGCcGCcaucgagaACCGCCGCc -3'
miRNA:   3'- auCGGGUa-------CGCGGCGuCG--------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 61747 0.69 0.221332
Target:  5'- -cGUCCGgcgagaucUGUGCgGCGGCaaucACCGCCGCa -3'
miRNA:   3'- auCGGGU--------ACGCGgCGUCG----UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 64761 0.69 0.226424
Target:  5'- -cGCCUcgcgacgGUGCGCCucgGCGGC-CCGCUGCg -3'
miRNA:   3'- auCGGG-------UACGCGG---CGUCGuGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 9268 0.69 0.226996
Target:  5'- cGGuCCCGaaacgGCGaguuaUGCGGUGCCGCCACg -3'
miRNA:   3'- aUC-GGGUa----CGCg----GCGUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 11817 0.69 0.232782
Target:  5'- gAGCUCGU-CGCUGUcGUACUGCCACc -3'
miRNA:   3'- aUCGGGUAcGCGGCGuCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 26058 0.69 0.232782
Target:  5'- uUGG-CCAUGcCGCCGCcgAGCagucccccgagGCCGCCGCc -3'
miRNA:   3'- -AUCgGGUAC-GCGGCG--UCG-----------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 37713 0.69 0.232782
Target:  5'- -uGCCC-UGCcagacCCGaGGCACCGCCGCc -3'
miRNA:   3'- auCGGGuACGc----GGCgUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 43256 0.69 0.232782
Target:  5'- -cGCCCGcgccggGUGCCugagaguugaccGCAGCGCCcGCCGCc -3'
miRNA:   3'- auCGGGUa-----CGCGG------------CGUCGUGG-CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.