miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 30749 0.66 0.342057
Target:  5'- gAGUUCAUGaacugcaugccgaCGCCgGUGGCACCGCUGCc -3'
miRNA:   3'- aUCGGGUAC-------------GCGG-CGUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 4372 0.66 0.334981
Target:  5'- -cGCCCGUGCcCUGCu-CAUCGCCAa -3'
miRNA:   3'- auCGGGUACGcGGCGucGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 62939 0.66 0.334981
Target:  5'- cGGCUCGcGCuGCUGCcgGGCACCGCUg- -3'
miRNA:   3'- aUCGGGUaCG-CGGCG--UCGUGGCGGug -5'
23328 5' -62.5 NC_005259.1 + 56763 0.66 0.334981
Target:  5'- gUGGCCCAUcgGgGaCCGCuuGaCACCGCCGu -3'
miRNA:   3'- -AUCGGGUA--CgC-GGCGu-C-GUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 22455 0.67 0.327244
Target:  5'- cUGGCUaccuCGUGCGCCcgcGCGGUcugACCGuCCGCa -3'
miRNA:   3'- -AUCGG----GUACGCGG---CGUCG---UGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 52332 0.67 0.327244
Target:  5'- gUGGCUCGgacaCGCCGguGUGCCGCUg- -3'
miRNA:   3'- -AUCGGGUac--GCGGCguCGUGGCGGug -5'
23328 5' -62.5 NC_005259.1 + 12316 0.67 0.319641
Target:  5'- -uGUCgGUGCGCaccgccgccaGCucacGCACCGCCGCc -3'
miRNA:   3'- auCGGgUACGCGg---------CGu---CGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 58816 0.67 0.319641
Target:  5'- gGGCUC--GCGCUGCucGGCACCcucGCCGCc -3'
miRNA:   3'- aUCGGGuaCGCGGCG--UCGUGG---CGGUG- -5'
23328 5' -62.5 NC_005259.1 + 26640 0.67 0.319641
Target:  5'- aUGGCCUggcGUGCGCUcgGCAGguUCGgCGCa -3'
miRNA:   3'- -AUCGGG---UACGCGG--CGUCguGGCgGUG- -5'
23328 5' -62.5 NC_005259.1 + 30570 0.67 0.319641
Target:  5'- -cGCCCuUG-GCCGCAGUAgCGCUg- -3'
miRNA:   3'- auCGGGuACgCGGCGUCGUgGCGGug -5'
23328 5' -62.5 NC_005259.1 + 41537 0.67 0.315143
Target:  5'- aAGCUCGU-CGUCGCAGUcgucgcgagcguuacACCGCCGg -3'
miRNA:   3'- aUCGGGUAcGCGGCGUCG---------------UGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 28635 0.67 0.31217
Target:  5'- aGGCCaCcgGUGCCGa--CACCGCCGa -3'
miRNA:   3'- aUCGG-GuaCGCGGCgucGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 10132 0.67 0.31217
Target:  5'- cAGCCCAcGCGCgCGCc-CGCCGuUCGCa -3'
miRNA:   3'- aUCGGGUaCGCG-GCGucGUGGC-GGUG- -5'
23328 5' -62.5 NC_005259.1 + 52584 0.67 0.31217
Target:  5'- cGGCCUGaGCGUCGCcgAGCACCagcGCCGu -3'
miRNA:   3'- aUCGGGUaCGCGGCG--UCGUGG---CGGUg -5'
23328 5' -62.5 NC_005259.1 + 35505 0.67 0.309956
Target:  5'- uUGGCCCcguUGcCGCCGCcGCcgggcacaccgcccGCCGUCGCc -3'
miRNA:   3'- -AUCGGGu--AC-GCGGCGuCG--------------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 11420 0.67 0.307752
Target:  5'- gUGGCCgGUGCaacggggaugcuuggGCCGCu-CGCUGCCGCc -3'
miRNA:   3'- -AUCGGgUACG---------------CGGCGucGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 46322 0.67 0.304834
Target:  5'- cGGCCCcgaggGUcGCGUCGC-GCACCGCUu- -3'
miRNA:   3'- aUCGGG-----UA-CGCGGCGuCGUGGCGGug -5'
23328 5' -62.5 NC_005259.1 + 37370 0.67 0.304834
Target:  5'- gUAGCUCAcGC-CCuCGGCACCGCC-Cg -3'
miRNA:   3'- -AUCGGGUaCGcGGcGUCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 48006 0.67 0.304834
Target:  5'- cGGCUUGUGUgaGCUGCuGCACCGCgccCACg -3'
miRNA:   3'- aUCGGGUACG--CGGCGuCGUGGCG---GUG- -5'
23328 5' -62.5 NC_005259.1 + 37235 0.67 0.304107
Target:  5'- cUGGCCCGUGCcggauuggcuGCCGCcGUugccaggcuugagGCCGCCcgGCa -3'
miRNA:   3'- -AUCGGGUACG----------CGGCGuCG-------------UGGCGG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.