Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23328 | 5' | -62.5 | NC_005259.1 | + | 38944 | 0.67 | 0.29763 |
Target: 5'- -uGCCCG-GUGCCGCu--GCCGCCGa -3' miRNA: 3'- auCGGGUaCGCGGCGucgUGGCGGUg -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 58699 | 0.67 | 0.29763 |
Target: 5'- cGGCUCGU-CGCCGC--CGCCGUCACc -3' miRNA: 3'- aUCGGGUAcGCGGCGucGUGGCGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 23896 | 0.67 | 0.290559 |
Target: 5'- -cGCCCGaGcCGCCGC-GC-CCGCCGu -3' miRNA: 3'- auCGGGUaC-GCGGCGuCGuGGCGGUg -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 36712 | 0.67 | 0.290559 |
Target: 5'- gAGCUCGUGCcgcucgacccGCCGC-GC-CCGCCGg -3' miRNA: 3'- aUCGGGUACG----------CGGCGuCGuGGCGGUg -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 45632 | 0.67 | 0.290559 |
Target: 5'- gGGCCgGgcagcGCGCCGguGCcgccgugaacACCGCCGu -3' miRNA: 3'- aUCGGgUa----CGCGGCguCG----------UGGCGGUg -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 53229 | 0.67 | 0.287767 |
Target: 5'- -cGCCCugcuugagguucGCGCCGCcGaCACCGUCGCc -3' miRNA: 3'- auCGGGua----------CGCGGCGuC-GUGGCGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 3124 | 0.68 | 0.28362 |
Target: 5'- cGGCaCCGUGgGCagcgGaCGGCACCGCC-Cg -3' miRNA: 3'- aUCG-GGUACgCGg---C-GUCGUGGCGGuG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 16438 | 0.68 | 0.28362 |
Target: 5'- cGGCCCAaaccggGCaCCGuCGGCAucgguaccCCGCCGCa -3' miRNA: 3'- aUCGGGUa-----CGcGGC-GUCGU--------GGCGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 30303 | 0.68 | 0.28362 |
Target: 5'- gUGGCCCAUuagacggcgaGCGCCGCGucGUACCugaCACg -3' miRNA: 3'- -AUCGGGUA----------CGCGGCGU--CGUGGcg-GUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 36626 | 0.68 | 0.282933 |
Target: 5'- -cGCCC--GCGCCGCccgcaaGGCccgcgaucagcgaGCCGCCGCc -3' miRNA: 3'- auCGGGuaCGCGGCG------UCG-------------UGGCGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 44583 | 0.68 | 0.276813 |
Target: 5'- aGGCUCAugauguucggcaUGC-CCGCAGCGCCcuuagcguuGCCGCc -3' miRNA: 3'- aUCGGGU------------ACGcGGCGUCGUGG---------CGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 18545 | 0.68 | 0.276813 |
Target: 5'- gAGCCCGccgacgaaccaU-CGCCGUA-CGCCGCCGCc -3' miRNA: 3'- aUCGGGU-----------AcGCGGCGUcGUGGCGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 38027 | 0.68 | 0.270137 |
Target: 5'- aGGCCC--GCGuuGguGUACCcgGCCACc -3' miRNA: 3'- aUCGGGuaCGCggCguCGUGG--CGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 46354 | 0.68 | 0.263591 |
Target: 5'- aGGUUC-UGgGCCGCgauGGCACCGCC-Cg -3' miRNA: 3'- aUCGGGuACgCGGCG---UCGUGGCGGuG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 31236 | 0.68 | 0.263591 |
Target: 5'- gAGaCCAUuggGCGCgGCGGUGCCGCCcCa -3' miRNA: 3'- aUCgGGUA---CGCGgCGUCGUGGCGGuG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 67975 | 0.68 | 0.263591 |
Target: 5'- -cGCgCA-GCGgCGUGGcCACCGCCGCg -3' miRNA: 3'- auCGgGUaCGCgGCGUC-GUGGCGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 46745 | 0.68 | 0.262944 |
Target: 5'- -uGCCCGcgauggcUGCGCCGaCAccuGCGCCgacaGCCGCg -3' miRNA: 3'- auCGGGU-------ACGCGGC-GU---CGUGG----CGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 22182 | 0.68 | 0.259086 |
Target: 5'- -cGCCCAucgugguUGCGaCCuuGCAgacguuggccaccgcGCACCGCCGCg -3' miRNA: 3'- auCGGGU-------ACGC-GG--CGU---------------CGUGGCGGUG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 24848 | 0.68 | 0.250887 |
Target: 5'- cAGUCCGUGCGCuaCGCcgaGGC-CCGCCuCg -3' miRNA: 3'- aUCGGGUACGCG--GCG---UCGuGGCGGuG- -5' |
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23328 | 5' | -62.5 | NC_005259.1 | + | 60487 | 0.68 | 0.250887 |
Target: 5'- -cGCaCCA-GCGCC-CAGCACgCGCCGg -3' miRNA: 3'- auCG-GGUaCGCGGcGUCGUG-GCGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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