miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23328 5' -62.5 NC_005259.1 + 67975 0.68 0.263591
Target:  5'- -cGCgCA-GCGgCGUGGcCACCGCCGCg -3'
miRNA:   3'- auCGgGUaCGCgGCGUC-GUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 66262 0.73 0.124085
Target:  5'- cGGCCC--GCGCCggGCGGCggcucacGCCGCCACc -3'
miRNA:   3'- aUCGGGuaCGCGG--CGUCG-------UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 64761 0.69 0.226424
Target:  5'- -cGCCUcgcgacgGUGCGCCucgGCGGC-CCGCUGCg -3'
miRNA:   3'- auCGGG-------UACGCGG---CGUCGuGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 63154 0.78 0.04608
Target:  5'- -cGCCCAcguUGagcagcCGCCGCAGCGCCGCCGa -3'
miRNA:   3'- auCGGGU---AC------GCGGCGUCGUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 62939 0.66 0.334981
Target:  5'- cGGCUCGcGCuGCUGCcgGGCACCGCUg- -3'
miRNA:   3'- aUCGGGUaCG-CGGCG--UCGUGGCGGug -5'
23328 5' -62.5 NC_005259.1 + 61747 0.69 0.221332
Target:  5'- -cGUCCGgcgagaucUGUGCgGCGGCaaucACCGCCGCa -3'
miRNA:   3'- auCGGGU--------ACGCGgCGUCG----UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 60487 0.68 0.250887
Target:  5'- -cGCaCCA-GCGCC-CAGCACgCGCCGg -3'
miRNA:   3'- auCG-GGUaCGCGGcGUCGUG-GCGGUg -5'
23328 5' -62.5 NC_005259.1 + 59512 0.69 0.215789
Target:  5'- -cGCCCGgcgaauUGCuguugGCCuuAGCGCCGCCACc -3'
miRNA:   3'- auCGGGU------ACG-----CGGcgUCGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 58816 0.67 0.319641
Target:  5'- gGGCUC--GCGCUGCucGGCACCcucGCCGCc -3'
miRNA:   3'- aUCGGGuaCGCGGCG--UCGUGG---CGGUG- -5'
23328 5' -62.5 NC_005259.1 + 58699 0.67 0.29763
Target:  5'- cGGCUCGU-CGCCGC--CGCCGUCACc -3'
miRNA:   3'- aUCGGGUAcGCGGCGucGUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 57002 0.66 0.375645
Target:  5'- -uGCCCGUGCGagcaCCuCAGCGCgGCUcgGCg -3'
miRNA:   3'- auCGGGUACGC----GGcGUCGUGgCGG--UG- -5'
23328 5' -62.5 NC_005259.1 + 56886 0.66 0.34285
Target:  5'- gAGCCgAc-CGCCaaucGCAGCgugGCCGCCGCa -3'
miRNA:   3'- aUCGGgUacGCGG----CGUCG---UGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 56763 0.66 0.334981
Target:  5'- gUGGCCCAUcgGgGaCCGCuuGaCACCGCCGu -3'
miRNA:   3'- -AUCGGGUA--CgC-GGCGu-C-GUGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 56262 0.66 0.362276
Target:  5'- cGGCCUugaGCGCCGCcgcccggcccguaucGGCACCagcagaCCACg -3'
miRNA:   3'- aUCGGGua-CGCGGCG---------------UCGUGGc-----GGUG- -5'
23328 5' -62.5 NC_005259.1 + 55513 0.73 0.108696
Target:  5'- aGGCCCAcagcgaacUGUGCCcaCAGCGCCGCCuCg -3'
miRNA:   3'- aUCGGGU--------ACGCGGc-GUCGUGGCGGuG- -5'
23328 5' -62.5 NC_005259.1 + 54733 0.66 0.358986
Target:  5'- aUAGCCgAgGCuGCCGaCAGCgaucagGCCGCCGa -3'
miRNA:   3'- -AUCGGgUaCG-CGGC-GUCG------UGGCGGUg -5'
23328 5' -62.5 NC_005259.1 + 53229 0.67 0.287767
Target:  5'- -cGCCCugcuugagguucGCGCCGCcGaCACCGUCGCc -3'
miRNA:   3'- auCGGGua----------CGCGGCGuC-GUGGCGGUG- -5'
23328 5' -62.5 NC_005259.1 + 52584 0.67 0.31217
Target:  5'- cGGCCUGaGCGUCGCcgAGCACCagcGCCGu -3'
miRNA:   3'- aUCGGGUaCGCGGCG--UCGUGG---CGGUg -5'
23328 5' -62.5 NC_005259.1 + 52332 0.67 0.327244
Target:  5'- gUGGCUCGgacaCGCCGguGUGCCGCUg- -3'
miRNA:   3'- -AUCGGGUac--GCGGCguCGUGGCGGug -5'
23328 5' -62.5 NC_005259.1 + 50386 0.73 0.114748
Target:  5'- cGGCCCAcGUGUCGCGGC-UCGCCGa -3'
miRNA:   3'- aUCGGGUaCGCGGCGUCGuGGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.