miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 12234 0.69 0.479577
Target:  5'- gGCCGGGCAA-UGgUCACAC--CGCCu -3'
miRNA:   3'- gCGGCCCGUUcACgGGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 7178 0.69 0.489498
Target:  5'- gGCaccGGCGAGUGCCCGgccUGCGgacgCACCg -3'
miRNA:   3'- gCGgc-CCGUUCACGGGU---GUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 31000 0.69 0.489498
Target:  5'- cCGCCgugGGGCcGGaacUGUCCACACGUgAUCg -3'
miRNA:   3'- -GCGG---CCCGuUC---ACGGGUGUGUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 52207 0.69 0.489498
Target:  5'- gGCUcauGGGCAccgcGUuccgcGCCCGCugAUCACCc -3'
miRNA:   3'- gCGG---CCCGUu---CA-----CGGGUGugUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 47888 0.69 0.493494
Target:  5'- gGCCGGGUcagcgucggcucguuGAGcGCCUugAuggCGUCGCCg -3'
miRNA:   3'- gCGGCCCG---------------UUCaCGGGugU---GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 4995 0.69 0.498509
Target:  5'- gGCCGGGCAcuacggcaagguGGUcgagaucgauccgGcCCCACACGacagCGCCa -3'
miRNA:   3'- gCGGCCCGU------------UCA-------------C-GGGUGUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 12559 0.69 0.508606
Target:  5'- uGCCGGGguGGcccgccagauccaUGCcgccCCACGCGUCgACCc -3'
miRNA:   3'- gCGGCCCguUC-------------ACG----GGUGUGUAG-UGG- -5'
23335 5' -57.3 NC_005259.1 + 17771 0.69 0.509621
Target:  5'- gCGCCGGGcCGAGcGCaCCGaGCGUgcgCACCg -3'
miRNA:   3'- -GCGGCCC-GUUCaCG-GGUgUGUA---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 37017 0.69 0.509621
Target:  5'- cCGCCGGGgaacaugaCAaugucgaucuuGGUGCCCGC-CAcCGCCc -3'
miRNA:   3'- -GCGGCCC--------GU-----------UCACGGGUGuGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 44482 0.68 0.52391
Target:  5'- gGCCGGGCcaguuggugacguagAccggGGUGCCCugGC--CACCc -3'
miRNA:   3'- gCGGCCCG---------------U----UCACGGGugUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 37278 0.68 0.529051
Target:  5'- cCGCCcGGCAggacuugcauggcGGUGCCCGcCGgGUCAgCa -3'
miRNA:   3'- -GCGGcCCGU-------------UCACGGGU-GUgUAGUgG- -5'
23335 5' -57.3 NC_005259.1 + 54357 0.68 0.530082
Target:  5'- gGUCGGGCAAcGgauugcGCUCGCG-AUCACCg -3'
miRNA:   3'- gCGGCCCGUU-Ca-----CGGGUGUgUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 46787 0.68 0.530082
Target:  5'- cCGCCGGGCcgaacaccGAGccUGCgaGCGCAcCACCg -3'
miRNA:   3'- -GCGGCCCG--------UUC--ACGggUGUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 51717 0.68 0.530082
Target:  5'- uCGaCCGGaCAAG-GCCCACAUgAUgGCCa -3'
miRNA:   3'- -GC-GGCCcGUUCaCGGGUGUG-UAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 36138 0.68 0.540425
Target:  5'- cCGCCGGGC---UGUCCGuCGcCAUgGCCa -3'
miRNA:   3'- -GCGGCCCGuucACGGGU-GU-GUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 34891 0.68 0.550836
Target:  5'- uGCCucGGGCAGGacgggccGCUCGgGCAUCACa -3'
miRNA:   3'- gCGG--CCCGUUCa------CGGGUgUGUAGUGg -5'
23335 5' -57.3 NC_005259.1 + 9826 0.68 0.550836
Target:  5'- cCGCCGGGUgcGgcgcugGCCCAaucgACAUUgACCa -3'
miRNA:   3'- -GCGGCCCGuuCa-----CGGGUg---UGUAG-UGG- -5'
23335 5' -57.3 NC_005259.1 + 29192 0.68 0.550836
Target:  5'- cCGUgGGGCGgauGGUucGCCCcCGCAugguUCGCCa -3'
miRNA:   3'- -GCGgCCCGU---UCA--CGGGuGUGU----AGUGG- -5'
23335 5' -57.3 NC_005259.1 + 31890 0.68 0.550836
Target:  5'- uCGCCGGucuCAAG-GCCCGgCGCGagCGCCu -3'
miRNA:   3'- -GCGGCCc--GUUCaCGGGU-GUGUa-GUGG- -5'
23335 5' -57.3 NC_005259.1 + 43817 0.68 0.550836
Target:  5'- uGCCGGGCGuaccGCCgGaCACAggGCCg -3'
miRNA:   3'- gCGGCCCGUuca-CGGgU-GUGUagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.