Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23335 | 5' | -57.3 | NC_005259.1 | + | 44397 | 0.71 | 0.360082 |
Target: 5'- uCGCCGaGCAcgucGGUGCCCGCcugaccgGCAgCGCCg -3' miRNA: 3'- -GCGGCcCGU----UCACGGGUG-------UGUaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 52270 | 0.71 | 0.360913 |
Target: 5'- gGCCGGGCAgacAGgaccgGCCCgAUGCG-CGCCu -3' miRNA: 3'- gCGGCCCGU---UCa----CGGG-UGUGUaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 68703 | 0.71 | 0.368446 |
Target: 5'- aGgCGGGCAgcgcgucGGUGCCCGagaACugggGUCGCCg -3' miRNA: 3'- gCgGCCCGU-------UCACGGGUg--UG----UAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 22638 | 0.71 | 0.376942 |
Target: 5'- uCGCCGcGUcGGUcgacgccGCCCAcCACAUCGCCg -3' miRNA: 3'- -GCGGCcCGuUCA-------CGGGU-GUGUAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 25237 | 0.71 | 0.38644 |
Target: 5'- -cUCGGGCAguuGGUGCUCAUGCAcccCACCg -3' miRNA: 3'- gcGGCCCGU---UCACGGGUGUGUa--GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 59476 | 0.71 | 0.403211 |
Target: 5'- uGuuGGGCAGGaugGCCCGauaGCcgagaguGUCACCg -3' miRNA: 3'- gCggCCCGUUCa--CGGGUg--UG-------UAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 44983 | 0.7 | 0.413129 |
Target: 5'- gGCCGGuGCGAcUGCCgAgGCAcCGCCg -3' miRNA: 3'- gCGGCC-CGUUcACGGgUgUGUaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 8820 | 0.7 | 0.431542 |
Target: 5'- gCGCCGGGCcGGUGaguugaCGCGCugCGCCg -3' miRNA: 3'- -GCGGCCCGuUCACgg----GUGUGuaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 45971 | 0.7 | 0.431542 |
Target: 5'- uGCCGagcuuGGCGAGUGUguCCGCguACAUCugCg -3' miRNA: 3'- gCGGC-----CCGUUCACG--GGUG--UGUAGugG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 45633 | 0.7 | 0.439983 |
Target: 5'- gGCCGGGCAgcgcgccGGUGCCgccgugaACAC--CGCCg -3' miRNA: 3'- gCGGCCCGU-------UCACGGg------UGUGuaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 9534 | 0.69 | 0.45907 |
Target: 5'- cCGCCGGGUcaccggaGAGcUGCCCGgccucgacCGCGUCGgCg -3' miRNA: 3'- -GCGGCCCG-------UUC-ACGGGU--------GUGUAGUgG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 27364 | 0.69 | 0.460036 |
Target: 5'- -aUCGGGCuuGGUGCCCGgCACgGUgACCg -3' miRNA: 3'- gcGGCCCGu-UCACGGGU-GUG-UAgUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 20137 | 0.69 | 0.469755 |
Target: 5'- uGCCGucgcgaugacGGCAgccGGUGCCCugGC--CACCg -3' miRNA: 3'- gCGGC----------CCGU---UCACGGGugUGuaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 49442 | 0.69 | 0.469755 |
Target: 5'- gCGCCGccuuggucGGCAgccGGaUGCCCAgCAgGUCGCCc -3' miRNA: 3'- -GCGGC--------CCGU---UC-ACGGGU-GUgUAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 57703 | 0.69 | 0.469755 |
Target: 5'- uGCCGGGCu--UGCCCGacuCGCgggucugccaGUCACCc -3' miRNA: 3'- gCGGCCCGuucACGGGU---GUG----------UAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 37359 | 0.69 | 0.469755 |
Target: 5'- cCGCUGuGCGAGUaGCUCACGCccucggCACCg -3' miRNA: 3'- -GCGGCcCGUUCA-CGGGUGUGua----GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 27407 | 0.69 | 0.473671 |
Target: 5'- aGCgGcGGCAgcucGGUGCCCGCgaggaauuggcucacGCGUCGCa -3' miRNA: 3'- gCGgC-CCGU----UCACGGGUG---------------UGUAGUGg -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 6226 | 0.69 | 0.476619 |
Target: 5'- gCGCCgacaccgugaccguGGGCGAGUGggucgauauCCCGCACcgcCGCCg -3' miRNA: 3'- -GCGG--------------CCCGUUCAC---------GGGUGUGua-GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 68524 | 0.69 | 0.479577 |
Target: 5'- uGCCGaGCGAGcUGCCCGCcacGCGUCGa- -3' miRNA: 3'- gCGGCcCGUUC-ACGGGUG---UGUAGUgg -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 19874 | 0.69 | 0.479577 |
Target: 5'- cCGCCGGGauc--GCCgACGCcgCGCCc -3' miRNA: 3'- -GCGGCCCguucaCGGgUGUGuaGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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