miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 8290 0.66 0.646364
Target:  5'- uGCgCGGGCA----CCCGCACGgaaaCGCCg -3'
miRNA:   3'- gCG-GCCCGUucacGGGUGUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 48918 0.67 0.635682
Target:  5'- uGCUGGGCcuGaccgacGCCaCGCACAagGCCa -3'
miRNA:   3'- gCGGCCCGuuCa-----CGG-GUGUGUagUGG- -5'
23335 5' -57.3 NC_005259.1 + 9686 0.67 0.635682
Target:  5'- uGCCGGuCGAGgucgccGCUCACugGgCACCg -3'
miRNA:   3'- gCGGCCcGUUCa-----CGGGUGugUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 46980 0.67 0.634613
Target:  5'- cCGCCgaugaucGGGCcgaGGGUGCgCCACGCGaggaaGCCg -3'
miRNA:   3'- -GCGG-------CCCG---UUCACG-GGUGUGUag---UGG- -5'
23335 5' -57.3 NC_005259.1 + 63437 0.67 0.624997
Target:  5'- cCGCuCGGGCGAGacaucgagGCCCAuggccaacCGCGUgAUCg -3'
miRNA:   3'- -GCG-GCCCGUUCa-------CGGGU--------GUGUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 36631 0.67 0.624997
Target:  5'- gCGCCGcccGCAAG-GCCCGCG-AUCAgCg -3'
miRNA:   3'- -GCGGCc--CGUUCaCGGGUGUgUAGUgG- -5'
23335 5' -57.3 NC_005259.1 + 22278 0.67 0.624997
Target:  5'- aCGCCGGGgccgaGGGUuUCCACACGacguUCACa -3'
miRNA:   3'- -GCGGCCCg----UUCAcGGGUGUGU----AGUGg -5'
23335 5' -57.3 NC_005259.1 + 1042 0.67 0.624997
Target:  5'- uGCCGGGUAcGGUccgaGUUCACGC-UCAUCg -3'
miRNA:   3'- gCGGCCCGU-UCA----CGGGUGUGuAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 44344 0.67 0.624997
Target:  5'- uGCCGGGCuuGU-UCCACGgcuCGUUGCCg -3'
miRNA:   3'- gCGGCCCGuuCAcGGGUGU---GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 27993 0.67 0.603654
Target:  5'- gGgUGGuGCGGGUGCCgGgGCGgggUCGCCg -3'
miRNA:   3'- gCgGCC-CGUUCACGGgUgUGU---AGUGG- -5'
23335 5' -57.3 NC_005259.1 + 19689 0.67 0.603654
Target:  5'- gGUCGGGauCGAGcagGCUCGCACGUUggcuGCCg -3'
miRNA:   3'- gCGGCCC--GUUCa--CGGGUGUGUAG----UGG- -5'
23335 5' -57.3 NC_005259.1 + 10696 0.67 0.603654
Target:  5'- uCGCCGuugagcauggacGGguAGUugGCCCGCAUgaugucggugAUCACCg -3'
miRNA:   3'- -GCGGC------------CCguUCA--CGGGUGUG----------UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 47988 0.67 0.600459
Target:  5'- uGCCGGGCAGcgcaagaccggcuuGUGUgagcugCUGCACcgCGCCc -3'
miRNA:   3'- gCGGCCCGUU--------------CACG------GGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 7951 0.67 0.593013
Target:  5'- gCGCCcacGGCugcuuGGUgGCCCACGCc-CACCg -3'
miRNA:   3'- -GCGGc--CCGu----UCA-CGGGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 17922 0.67 0.593013
Target:  5'- uGcCCGGucuggaccGCGcccGGUGUCCACGCcUCACCc -3'
miRNA:   3'- gC-GGCC--------CGU---UCACGGGUGUGuAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 57649 0.67 0.593013
Target:  5'- cCGCCGGGUAca-GCa-GCACGUCgACCg -3'
miRNA:   3'- -GCGGCCCGUucaCGggUGUGUAG-UGG- -5'
23335 5' -57.3 NC_005259.1 + 29964 0.67 0.589826
Target:  5'- gGUgGGGCGggcGGUGaccguccaacggacCCCGCACggugGUCACCa -3'
miRNA:   3'- gCGgCCCGU---UCAC--------------GGGUGUG----UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 25947 0.67 0.582402
Target:  5'- aCGCCGGuGCccg-GCCCGC-CGaCGCCu -3'
miRNA:   3'- -GCGGCC-CGuucaCGGGUGuGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 21385 0.67 0.582402
Target:  5'- uCGCCGaGGC-GGUGCaaCGCGCAUgggaCGCCc -3'
miRNA:   3'- -GCGGC-CCGuUCACGg-GUGUGUA----GUGG- -5'
23335 5' -57.3 NC_005259.1 + 3331 0.68 0.561307
Target:  5'- gCGCCGGGCAGcucugcGUGCUCgGCACGacUCGa- -3'
miRNA:   3'- -GCGGCCCGUU------CACGGG-UGUGU--AGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.