miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 27993 0.67 0.603654
Target:  5'- gGgUGGuGCGGGUGCCgGgGCGgggUCGCCg -3'
miRNA:   3'- gCgGCC-CGUUCACGGgUgUGU---AGUGG- -5'
23335 5' -57.3 NC_005259.1 + 10696 0.67 0.603654
Target:  5'- uCGCCGuugagcauggacGGguAGUugGCCCGCAUgaugucggugAUCACCg -3'
miRNA:   3'- -GCGGC------------CCguUCA--CGGGUGUG----------UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 1042 0.67 0.624997
Target:  5'- uGCCGGGUAcGGUccgaGUUCACGC-UCAUCg -3'
miRNA:   3'- gCGGCCCGU-UCA----CGGGUGUGuAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 22278 0.67 0.624997
Target:  5'- aCGCCGGGgccgaGGGUuUCCACACGacguUCACa -3'
miRNA:   3'- -GCGGCCCg----UUCAcGGGUGUGU----AGUGg -5'
23335 5' -57.3 NC_005259.1 + 36631 0.67 0.624997
Target:  5'- gCGCCGcccGCAAG-GCCCGCG-AUCAgCg -3'
miRNA:   3'- -GCGGCc--CGUUCaCGGGUGUgUAGUgG- -5'
23335 5' -57.3 NC_005259.1 + 44344 0.67 0.624997
Target:  5'- uGCCGGGCuuGU-UCCACGgcuCGUUGCCg -3'
miRNA:   3'- gCGGCCCGuuCAcGGGUGU---GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 58724 0.66 0.657033
Target:  5'- uCGCCGGG--GGUGUCgUugGCAccggCACCg -3'
miRNA:   3'- -GCGGCCCguUCACGG-GugUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 44103 0.66 0.688873
Target:  5'- aCGUCGacCAucUGCUCGCGCAUCGCCu -3'
miRNA:   3'- -GCGGCccGUucACGGGUGUGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 16333 0.66 0.688873
Target:  5'- uGCCcgauGCAcGGaUGCCCGCACAagACCg -3'
miRNA:   3'- gCGGcc--CGU-UC-ACGGGUGUGUagUGG- -5'
23335 5' -57.3 NC_005259.1 + 7507 0.66 0.688873
Target:  5'- uGUCGGGCGGGaGaCCCGC-CAcCACa -3'
miRNA:   3'- gCGGCCCGUUCaC-GGGUGuGUaGUGg -5'
23335 5' -57.3 NC_005259.1 + 28389 0.66 0.678298
Target:  5'- -aCCGGacgacaguguGUAGGUGCCCGCGCG-CAUg -3'
miRNA:   3'- gcGGCC----------CGUUCACGGGUGUGUaGUGg -5'
23335 5' -57.3 NC_005259.1 + 26914 0.66 0.678298
Target:  5'- gGCCGGGUuucuUGCCCucguggaucucgGCAUA-CGCCg -3'
miRNA:   3'- gCGGCCCGuuc-ACGGG------------UGUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 19535 0.66 0.678298
Target:  5'- cCGCCGuGCAGGccgacgcguaUGCCCGCAgcCGUCgggacagcGCCg -3'
miRNA:   3'- -GCGGCcCGUUC----------ACGGGUGU--GUAG--------UGG- -5'
23335 5' -57.3 NC_005259.1 + 20527 0.66 0.678298
Target:  5'- aGCaCGGGUgcGcUGCCCGCAgCGUgguggaucagCACCg -3'
miRNA:   3'- gCG-GCCCGuuC-ACGGGUGU-GUA----------GUGG- -5'
23335 5' -57.3 NC_005259.1 + 29902 0.66 0.678298
Target:  5'- aGCacaaGGGguGGcUGCCCgagaccaucgACGCGUgGCCg -3'
miRNA:   3'- gCGg---CCCguUC-ACGGG----------UGUGUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 34066 0.66 0.667681
Target:  5'- cCGaCCacGGCGgcGGUGUCCACACGUagGCCc -3'
miRNA:   3'- -GC-GGc-CCGU--UCACGGGUGUGUAg-UGG- -5'
23335 5' -57.3 NC_005259.1 + 50370 0.66 0.667681
Target:  5'- uGCUcGGCGAGaaacucgGCCCACGUGUCGCg -3'
miRNA:   3'- gCGGcCCGUUCa------CGGGUGUGUAGUGg -5'
23335 5' -57.3 NC_005259.1 + 49108 0.66 0.667681
Target:  5'- cCGCCGGGaucuCAAGa---CGCugAUCACCg -3'
miRNA:   3'- -GCGGCCC----GUUCacggGUGugUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 3862 0.66 0.658099
Target:  5'- aCGCCGGuCGAGcgccucgaGCCCACcccgcagcgcgacauCGUCGCCa -3'
miRNA:   3'- -GCGGCCcGUUCa-------CGGGUGu--------------GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 48918 0.67 0.635682
Target:  5'- uGCUGGGCcuGaccgacGCCaCGCACAagGCCa -3'
miRNA:   3'- gCGGCCCGuuCa-----CGG-GUGUGUagUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.