miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 9826 0.68 0.550836
Target:  5'- cCGCCGGGUgcGgcgcugGCCCAaucgACAUUgACCa -3'
miRNA:   3'- -GCGGCCCGuuCa-----CGGGUg---UGUAG-UGG- -5'
23335 5' -57.3 NC_005259.1 + 10696 0.67 0.603654
Target:  5'- uCGCCGuugagcauggacGGguAGUugGCCCGCAUgaugucggugAUCACCg -3'
miRNA:   3'- -GCGGC------------CCguUCA--CGGGUGUG----------UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 11021 0.68 0.550836
Target:  5'- gCGCCGaGGCAGGaGUUCGCcgggugGUCACCg -3'
miRNA:   3'- -GCGGC-CCGUUCaCGGGUGug----UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 12234 0.69 0.479577
Target:  5'- gGCCGGGCAA-UGgUCACAC--CGCCu -3'
miRNA:   3'- gCGGCCCGUUcACgGGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 12559 0.69 0.508606
Target:  5'- uGCCGGGguGGcccgccagauccaUGCcgccCCACGCGUCgACCc -3'
miRNA:   3'- gCGGCCCguUC-------------ACG----GGUGUGUAG-UGG- -5'
23335 5' -57.3 NC_005259.1 + 14174 0.76 0.199865
Target:  5'- uCGCCGGGCGGGUGgCaacCGC-UCACCc -3'
miRNA:   3'- -GCGGCCCGUUCACgGgu-GUGuAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 14754 0.77 0.166358
Target:  5'- gGCCGGGCcGGUGauCCUGCACAacgCGCCg -3'
miRNA:   3'- gCGGCCCGuUCAC--GGGUGUGUa--GUGG- -5'
23335 5' -57.3 NC_005259.1 + 16333 0.66 0.688873
Target:  5'- uGCCcgauGCAcGGaUGCCCGCACAagACCg -3'
miRNA:   3'- gCGGcc--CGU-UC-ACGGGUGUGUagUGG- -5'
23335 5' -57.3 NC_005259.1 + 17771 0.69 0.509621
Target:  5'- gCGCCGGGcCGAGcGCaCCGaGCGUgcgCACCg -3'
miRNA:   3'- -GCGGCCC-GUUCaCG-GGUgUGUA---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 17922 0.67 0.593013
Target:  5'- uGcCCGGucuggaccGCGcccGGUGUCCACGCcUCACCc -3'
miRNA:   3'- gC-GGCC--------CGU---UCACGGGUGUGuAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 18525 0.72 0.344559
Target:  5'- cCGCCGauuucGGCAAGgcagaGCCCGCcgacgaacCAUCGCCg -3'
miRNA:   3'- -GCGGC-----CCGUUCa----CGGGUGu-------GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 19361 0.8 0.094137
Target:  5'- aCGCCGGGauCAAG-GcCCCGCugAUCACCg -3'
miRNA:   3'- -GCGGCCC--GUUCaC-GGGUGugUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 19535 0.66 0.678298
Target:  5'- cCGCCGuGCAGGccgacgcguaUGCCCGCAgcCGUCgggacagcGCCg -3'
miRNA:   3'- -GCGGCcCGUUC----------ACGGGUGU--GUAG--------UGG- -5'
23335 5' -57.3 NC_005259.1 + 19689 0.67 0.603654
Target:  5'- gGUCGGGauCGAGcagGCUCGCACGUUggcuGCCg -3'
miRNA:   3'- gCGGCCC--GUUCa--CGGGUGUGUAG----UGG- -5'
23335 5' -57.3 NC_005259.1 + 19874 0.69 0.479577
Target:  5'- cCGCCGGGauc--GCCgACGCcgCGCCc -3'
miRNA:   3'- -GCGGCCCguucaCGGgUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 20137 0.69 0.469755
Target:  5'- uGCCGucgcgaugacGGCAgccGGUGCCCugGC--CACCg -3'
miRNA:   3'- gCGGC----------CCGU---UCACGGGugUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 20527 0.66 0.678298
Target:  5'- aGCaCGGGUgcGcUGCCCGCAgCGUgguggaucagCACCg -3'
miRNA:   3'- gCG-GCCCGuuC-ACGGGUGU-GUA----------GUGG- -5'
23335 5' -57.3 NC_005259.1 + 21385 0.67 0.582402
Target:  5'- uCGCCGaGGC-GGUGCaaCGCGCAUgggaCGCCc -3'
miRNA:   3'- -GCGGC-CCGuUCACGg-GUGUGUA----GUGG- -5'
23335 5' -57.3 NC_005259.1 + 22278 0.67 0.624997
Target:  5'- aCGCCGGGgccgaGGGUuUCCACACGacguUCACa -3'
miRNA:   3'- -GCGGCCCg----UUCAcGGGUGUGU----AGUGg -5'
23335 5' -57.3 NC_005259.1 + 22638 0.71 0.376942
Target:  5'- uCGCCGcGUcGGUcgacgccGCCCAcCACAUCGCCg -3'
miRNA:   3'- -GCGGCcCGuUCA-------CGGGU-GUGUAGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.