Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23335 | 5' | -57.3 | NC_005259.1 | + | 9826 | 0.68 | 0.550836 |
Target: 5'- cCGCCGGGUgcGgcgcugGCCCAaucgACAUUgACCa -3' miRNA: 3'- -GCGGCCCGuuCa-----CGGGUg---UGUAG-UGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 10696 | 0.67 | 0.603654 |
Target: 5'- uCGCCGuugagcauggacGGguAGUugGCCCGCAUgaugucggugAUCACCg -3' miRNA: 3'- -GCGGC------------CCguUCA--CGGGUGUG----------UAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 11021 | 0.68 | 0.550836 |
Target: 5'- gCGCCGaGGCAGGaGUUCGCcgggugGUCACCg -3' miRNA: 3'- -GCGGC-CCGUUCaCGGGUGug----UAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 12234 | 0.69 | 0.479577 |
Target: 5'- gGCCGGGCAA-UGgUCACAC--CGCCu -3' miRNA: 3'- gCGGCCCGUUcACgGGUGUGuaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 12559 | 0.69 | 0.508606 |
Target: 5'- uGCCGGGguGGcccgccagauccaUGCcgccCCACGCGUCgACCc -3' miRNA: 3'- gCGGCCCguUC-------------ACG----GGUGUGUAG-UGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 14174 | 0.76 | 0.199865 |
Target: 5'- uCGCCGGGCGGGUGgCaacCGC-UCACCc -3' miRNA: 3'- -GCGGCCCGUUCACgGgu-GUGuAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 14754 | 0.77 | 0.166358 |
Target: 5'- gGCCGGGCcGGUGauCCUGCACAacgCGCCg -3' miRNA: 3'- gCGGCCCGuUCAC--GGGUGUGUa--GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 16333 | 0.66 | 0.688873 |
Target: 5'- uGCCcgauGCAcGGaUGCCCGCACAagACCg -3' miRNA: 3'- gCGGcc--CGU-UC-ACGGGUGUGUagUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 17771 | 0.69 | 0.509621 |
Target: 5'- gCGCCGGGcCGAGcGCaCCGaGCGUgcgCACCg -3' miRNA: 3'- -GCGGCCC-GUUCaCG-GGUgUGUA---GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 17922 | 0.67 | 0.593013 |
Target: 5'- uGcCCGGucuggaccGCGcccGGUGUCCACGCcUCACCc -3' miRNA: 3'- gC-GGCC--------CGU---UCACGGGUGUGuAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 18525 | 0.72 | 0.344559 |
Target: 5'- cCGCCGauuucGGCAAGgcagaGCCCGCcgacgaacCAUCGCCg -3' miRNA: 3'- -GCGGC-----CCGUUCa----CGGGUGu-------GUAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 19361 | 0.8 | 0.094137 |
Target: 5'- aCGCCGGGauCAAG-GcCCCGCugAUCACCg -3' miRNA: 3'- -GCGGCCC--GUUCaC-GGGUGugUAGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 19535 | 0.66 | 0.678298 |
Target: 5'- cCGCCGuGCAGGccgacgcguaUGCCCGCAgcCGUCgggacagcGCCg -3' miRNA: 3'- -GCGGCcCGUUC----------ACGGGUGU--GUAG--------UGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 19689 | 0.67 | 0.603654 |
Target: 5'- gGUCGGGauCGAGcagGCUCGCACGUUggcuGCCg -3' miRNA: 3'- gCGGCCC--GUUCa--CGGGUGUGUAG----UGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 19874 | 0.69 | 0.479577 |
Target: 5'- cCGCCGGGauc--GCCgACGCcgCGCCc -3' miRNA: 3'- -GCGGCCCguucaCGGgUGUGuaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 20137 | 0.69 | 0.469755 |
Target: 5'- uGCCGucgcgaugacGGCAgccGGUGCCCugGC--CACCg -3' miRNA: 3'- gCGGC----------CCGU---UCACGGGugUGuaGUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 20527 | 0.66 | 0.678298 |
Target: 5'- aGCaCGGGUgcGcUGCCCGCAgCGUgguggaucagCACCg -3' miRNA: 3'- gCG-GCCCGuuC-ACGGGUGU-GUA----------GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 21385 | 0.67 | 0.582402 |
Target: 5'- uCGCCGaGGC-GGUGCaaCGCGCAUgggaCGCCc -3' miRNA: 3'- -GCGGC-CCGuUCACGg-GUGUGUA----GUGG- -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 22278 | 0.67 | 0.624997 |
Target: 5'- aCGCCGGGgccgaGGGUuUCCACACGacguUCACa -3' miRNA: 3'- -GCGGCCCg----UUCAcGGGUGUGU----AGUGg -5' |
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23335 | 5' | -57.3 | NC_005259.1 | + | 22638 | 0.71 | 0.376942 |
Target: 5'- uCGCCGcGUcGGUcgacgccGCCCAcCACAUCGCCg -3' miRNA: 3'- -GCGGCcCGuUCA-------CGGGU-GUGUAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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