miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 750 0.66 0.646364
Target:  5'- aCGCC--GCcGGUGCCUAcCGCGUcCACCg -3'
miRNA:   3'- -GCGGccCGuUCACGGGU-GUGUA-GUGG- -5'
23335 5' -57.3 NC_005259.1 + 1042 0.67 0.624997
Target:  5'- uGCCGGGUAcGGUccgaGUUCACGC-UCAUCg -3'
miRNA:   3'- gCGGCCCGU-UCA----CGGGUGUGuAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 1377 0.74 0.245198
Target:  5'- gCGCCGcccGCGAG-GCCCGCGCAUgaGCCu -3'
miRNA:   3'- -GCGGCc--CGUUCaCGGGUGUGUAg-UGG- -5'
23335 5' -57.3 NC_005259.1 + 3331 0.68 0.561307
Target:  5'- gCGCCGGGCAGcucugcGUGCUCgGCACGacUCGa- -3'
miRNA:   3'- -GCGGCCCGUU------CACGGG-UGUGU--AGUgg -5'
23335 5' -57.3 NC_005259.1 + 3862 0.66 0.658099
Target:  5'- aCGCCGGuCGAGcgccucgaGCCCACcccgcagcgcgacauCGUCGCCa -3'
miRNA:   3'- -GCGGCCcGUUCa-------CGGGUGu--------------GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 4359 0.73 0.306041
Target:  5'- gCGCCGGacgGCAcgcccGUGCCCuGCuCAUCGCCa -3'
miRNA:   3'- -GCGGCC---CGUu----CACGGG-UGuGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 4510 0.66 0.657033
Target:  5'- gCGCCGGG--AGUgGCgCUGCGCggCACCc -3'
miRNA:   3'- -GCGGCCCguUCA-CG-GGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 4621 0.76 0.189732
Target:  5'- gGCCGguGGCGcgaguucuggauAGUGCCCGCGCAccgCGCCu -3'
miRNA:   3'- gCGGC--CCGU------------UCACGGGUGUGUa--GUGG- -5'
23335 5' -57.3 NC_005259.1 + 4995 0.69 0.498509
Target:  5'- gGCCGGGCAcuacggcaagguGGUcgagaucgauccgGcCCCACACGacagCGCCa -3'
miRNA:   3'- gCGGCCCGU------------UCA-------------C-GGGUGUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 5373 1.12 0.0005
Target:  5'- gCGCCGGGCAAGUGCCCACACAUCACCa -3'
miRNA:   3'- -GCGGCCCGUUCACGGGUGUGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 6226 0.69 0.476619
Target:  5'- gCGCCgacaccgugaccguGGGCGAGUGggucgauauCCCGCACcgcCGCCg -3'
miRNA:   3'- -GCGG--------------CCCGUUCAC---------GGGUGUGua-GUGG- -5'
23335 5' -57.3 NC_005259.1 + 6332 0.76 0.179582
Target:  5'- uGCCGGGCAcacccacgacggGGUGCCguacgugCGCACGuugUCGCCg -3'
miRNA:   3'- gCGGCCCGU------------UCACGG-------GUGUGU---AGUGG- -5'
23335 5' -57.3 NC_005259.1 + 7178 0.69 0.489498
Target:  5'- gGCaccGGCGAGUGCCCGgccUGCGgacgCACCg -3'
miRNA:   3'- gCGgc-CCGUUCACGGGU---GUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 7422 0.75 0.210465
Target:  5'- uCGCCGucGGC-GGUGCCCGCGCcgCAUg -3'
miRNA:   3'- -GCGGC--CCGuUCACGGGUGUGuaGUGg -5'
23335 5' -57.3 NC_005259.1 + 7507 0.66 0.688873
Target:  5'- uGUCGGGCGGGaGaCCCGC-CAcCACa -3'
miRNA:   3'- gCGGCCCGUUCaC-GGGUGuGUaGUGg -5'
23335 5' -57.3 NC_005259.1 + 7951 0.67 0.593013
Target:  5'- gCGCCcacGGCugcuuGGUgGCCCACGCc-CACCg -3'
miRNA:   3'- -GCGGc--CCGu----UCA-CGGGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 8290 0.66 0.646364
Target:  5'- uGCgCGGGCA----CCCGCACGgaaaCGCCg -3'
miRNA:   3'- gCG-GCCCGUucacGGGUGUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 8820 0.7 0.431542
Target:  5'- gCGCCGGGCcGGUGaguugaCGCGCugCGCCg -3'
miRNA:   3'- -GCGGCCCGuUCACgg----GUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 9534 0.69 0.45907
Target:  5'- cCGCCGGGUcaccggaGAGcUGCCCGgccucgacCGCGUCGgCg -3'
miRNA:   3'- -GCGGCCCG-------UUC-ACGGGU--------GUGUAGUgG- -5'
23335 5' -57.3 NC_005259.1 + 9686 0.67 0.635682
Target:  5'- uGCCGGuCGAGgucgccGCUCACugGgCACCg -3'
miRNA:   3'- gCGGCCcGUUCa-----CGGGUGugUaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.