miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 68703 0.71 0.368446
Target:  5'- aGgCGGGCAgcgcgucGGUGCCCGagaACugggGUCGCCg -3'
miRNA:   3'- gCgGCCCGU-------UCACGGGUg--UG----UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 68524 0.69 0.479577
Target:  5'- uGCCGaGCGAGcUGCCCGCcacGCGUCGa- -3'
miRNA:   3'- gCGGCcCGUUC-ACGGGUG---UGUAGUgg -5'
23335 5' -57.3 NC_005259.1 + 66268 0.76 0.180054
Target:  5'- gCGCCGGGCGGcgGCUCACGCcgcCACCa -3'
miRNA:   3'- -GCGGCCCGUUcaCGGGUGUGua-GUGG- -5'
23335 5' -57.3 NC_005259.1 + 63437 0.67 0.624997
Target:  5'- cCGCuCGGGCGAGacaucgagGCCCAuggccaacCGCGUgAUCg -3'
miRNA:   3'- -GCG-GCCCGUUCa-------CGGGU--------GUGUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 61545 0.74 0.245198
Target:  5'- uCGUcuCGGGCGAGaaUGCCgACACggCACCg -3'
miRNA:   3'- -GCG--GCCCGUUC--ACGGgUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 59476 0.71 0.403211
Target:  5'- uGuuGGGCAGGaugGCCCGauaGCcgagaguGUCACCg -3'
miRNA:   3'- gCggCCCGUUCa--CGGGUg--UG-------UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 58724 0.66 0.657033
Target:  5'- uCGCCGGG--GGUGUCgUugGCAccggCACCg -3'
miRNA:   3'- -GCGGCCCguUCACGG-GugUGUa---GUGG- -5'
23335 5' -57.3 NC_005259.1 + 57703 0.69 0.469755
Target:  5'- uGCCGGGCu--UGCCCGacuCGCgggucugccaGUCACCc -3'
miRNA:   3'- gCGGCCCGuucACGGGU---GUG----------UAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 57649 0.67 0.593013
Target:  5'- cCGCCGGGUAca-GCa-GCACGUCgACCg -3'
miRNA:   3'- -GCGGCCCGUucaCGggUGUGUAG-UGG- -5'
23335 5' -57.3 NC_005259.1 + 54357 0.68 0.530082
Target:  5'- gGUCGGGCAAcGgauugcGCUCGCG-AUCACCg -3'
miRNA:   3'- gCGGCCCGUU-Ca-----CGGGUGUgUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 52270 0.71 0.360913
Target:  5'- gGCCGGGCAgacAGgaccgGCCCgAUGCG-CGCCu -3'
miRNA:   3'- gCGGCCCGU---UCa----CGGG-UGUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 52207 0.69 0.489498
Target:  5'- gGCUcauGGGCAccgcGUuccgcGCCCGCugAUCACCc -3'
miRNA:   3'- gCGG---CCCGUu---CA-----CGGGUGugUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 51717 0.68 0.530082
Target:  5'- uCGaCCGGaCAAG-GCCCACAUgAUgGCCa -3'
miRNA:   3'- -GC-GGCCcGUUCaCGGGUGUG-UAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 51545 0.74 0.25143
Target:  5'- gGCCGGGCAAGUGCaCG-ACGUUgggGCCa -3'
miRNA:   3'- gCGGCCCGUUCACGgGUgUGUAG---UGG- -5'
23335 5' -57.3 NC_005259.1 + 50370 0.66 0.667681
Target:  5'- uGCUcGGCGAGaaacucgGCCCACGUGUCGCg -3'
miRNA:   3'- gCGGcCCGUUCa------CGGGUGUGUAGUGg -5'
23335 5' -57.3 NC_005259.1 + 49442 0.69 0.469755
Target:  5'- gCGCCGccuuggucGGCAgccGGaUGCCCAgCAgGUCGCCc -3'
miRNA:   3'- -GCGGC--------CCGU---UC-ACGGGU-GUgUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 49108 0.66 0.667681
Target:  5'- cCGCCGGGaucuCAAGa---CGCugAUCACCg -3'
miRNA:   3'- -GCGGCCC----GUUCacggGUGugUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 48918 0.67 0.635682
Target:  5'- uGCUGGGCcuGaccgacGCCaCGCACAagGCCa -3'
miRNA:   3'- gCGGCCCGuuCa-----CGG-GUGUGUagUGG- -5'
23335 5' -57.3 NC_005259.1 + 47988 0.67 0.600459
Target:  5'- uGCCGGGCAGcgcaagaccggcuuGUGUgagcugCUGCACcgCGCCc -3'
miRNA:   3'- gCGGCCCGUU--------------CACG------GGUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 47888 0.69 0.493494
Target:  5'- gGCCGGGUcagcgucggcucguuGAGcGCCUugAuggCGUCGCCg -3'
miRNA:   3'- gCGGCCCG---------------UUCaCGGGugU---GUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.