miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23335 5' -57.3 NC_005259.1 + 5373 1.12 0.0005
Target:  5'- gCGCCGGGCAAGUGCCCACACAUCACCa -3'
miRNA:   3'- -GCGGCCCGUUCACGGGUGUGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 35523 0.84 0.056928
Target:  5'- cCGCCGGGCAcaccGCCCGC-CGUCGCCg -3'
miRNA:   3'- -GCGGCCCGUuca-CGGGUGuGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 19361 0.8 0.094137
Target:  5'- aCGCCGGGauCAAG-GcCCCGCugAUCACCg -3'
miRNA:   3'- -GCGGCCC--GUUCaC-GGGUGugUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 44676 0.78 0.130725
Target:  5'- cCGuuGGGCAGcGUgGCCCGCAUAUgGCCc -3'
miRNA:   3'- -GCggCCCGUU-CA-CGGGUGUGUAgUGG- -5'
23335 5' -57.3 NC_005259.1 + 26406 0.78 0.1456
Target:  5'- aCGCCGGGCGcggcGGUGCCgccguagaACGCAcCGCCg -3'
miRNA:   3'- -GCGGCCCGU----UCACGGg-------UGUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 27506 0.77 0.166358
Target:  5'- gCGCCGaGGuCGAcGUGUCCGCACA-CGCCg -3'
miRNA:   3'- -GCGGC-CC-GUU-CACGGGUGUGUaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 14754 0.77 0.166358
Target:  5'- gGCCGGGCcGGUGauCCUGCACAacgCGCCg -3'
miRNA:   3'- gCGGCCCGuUCAC--GGGUGUGUa--GUGG- -5'
23335 5' -57.3 NC_005259.1 + 6332 0.76 0.179582
Target:  5'- uGCCGGGCAcacccacgacggGGUGCCguacgugCGCACGuugUCGCCg -3'
miRNA:   3'- gCGGCCCGU------------UCACGG-------GUGUGU---AGUGG- -5'
23335 5' -57.3 NC_005259.1 + 66268 0.76 0.180054
Target:  5'- gCGCCGGGCGGcgGCUCACGCcgcCACCa -3'
miRNA:   3'- -GCGGCCCGUUcaCGGGUGUGua-GUGG- -5'
23335 5' -57.3 NC_005259.1 + 4621 0.76 0.189732
Target:  5'- gGCCGguGGCGcgaguucuggauAGUGCCCGCGCAccgCGCCu -3'
miRNA:   3'- gCGGC--CCGU------------UCACGGGUGUGUa--GUGG- -5'
23335 5' -57.3 NC_005259.1 + 14174 0.76 0.199865
Target:  5'- uCGCCGGGCGGGUGgCaacCGC-UCACCc -3'
miRNA:   3'- -GCGGCCCGUUCACgGgu-GUGuAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 7422 0.75 0.210465
Target:  5'- uCGCCGucGGC-GGUGCCCGCGCcgCAUg -3'
miRNA:   3'- -GCGGC--CCGuUCACGGGUGUGuaGUGg -5'
23335 5' -57.3 NC_005259.1 + 1377 0.74 0.245198
Target:  5'- gCGCCGcccGCGAG-GCCCGCGCAUgaGCCu -3'
miRNA:   3'- -GCGGCc--CGUUCaCGGGUGUGUAg-UGG- -5'
23335 5' -57.3 NC_005259.1 + 61545 0.74 0.245198
Target:  5'- uCGUcuCGGGCGAGaaUGCCgACACggCACCg -3'
miRNA:   3'- -GCG--GCCCGUUC--ACGGgUGUGuaGUGG- -5'
23335 5' -57.3 NC_005259.1 + 51545 0.74 0.25143
Target:  5'- gGCCGGGCAAGUGCaCG-ACGUUgggGCCa -3'
miRNA:   3'- gCGGCCCGUUCACGgGUgUGUAG---UGG- -5'
23335 5' -57.3 NC_005259.1 + 32367 0.74 0.264284
Target:  5'- cCGCCguguaGGGCGGGcacUGCCCGC-CGUCGCg -3'
miRNA:   3'- -GCGG-----CCCGUUC---ACGGGUGuGUAGUGg -5'
23335 5' -57.3 NC_005259.1 + 4359 0.73 0.306041
Target:  5'- gCGCCGGacgGCAcgcccGUGCCCuGCuCAUCGCCa -3'
miRNA:   3'- -GCGGCC---CGUu----CACGGG-UGuGUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 43750 0.72 0.313473
Target:  5'- aGCCGGGCAacaucggaAGUGUUgaGCACGuacUCGCCg -3'
miRNA:   3'- gCGGCCCGU--------UCACGGg-UGUGU---AGUGG- -5'
23335 5' -57.3 NC_005259.1 + 18525 0.72 0.344559
Target:  5'- cCGCCGauuucGGCAAGgcagaGCCCGCcgacgaacCAUCGCCg -3'
miRNA:   3'- -GCGGC-----CCGUUCa----CGGGUGu-------GUAGUGG- -5'
23335 5' -57.3 NC_005259.1 + 45558 0.72 0.352668
Target:  5'- uCGCCGGGCcacccuUGCCCGCGagaauGUCACg -3'
miRNA:   3'- -GCGGCCCGuuc---ACGGGUGUg----UAGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.