miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 40664 0.7 0.712581
Target:  5'- uCGCCGAGCAGCgCGAgCGCCuuGgUGCu -3'
miRNA:   3'- -GCGGUUCGUUG-GCU-GUGGcuUgAUGc -5'
23337 3' -52.4 NC_005259.1 + 43783 0.7 0.691036
Target:  5'- uCGCCGGGCAugagcagcGCgGGCACCGAGuccUUGCc -3'
miRNA:   3'- -GCGGUUCGU--------UGgCUGUGGCUU---GAUGc -5'
23337 3' -52.4 NC_005259.1 + 63427 0.7 0.691036
Target:  5'- uGCCGAGCAGCCG-C-UCGGGCgagACa -3'
miRNA:   3'- gCGGUUCGUUGGCuGuGGCUUGa--UGc -5'
23337 3' -52.4 NC_005259.1 + 42517 0.7 0.698607
Target:  5'- gGCCA-GCAGCCGuccggccccgauggGCACCGAGgugGCGg -3'
miRNA:   3'- gCGGUuCGUUGGC--------------UGUGGCUUga-UGC- -5'
23337 3' -52.4 NC_005259.1 + 66246 0.7 0.701842
Target:  5'- aGCCAucgacgcagcGCGGCCcGCGCCGGGCgGCGg -3'
miRNA:   3'- gCGGUu---------CGUUGGcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 17350 0.7 0.701842
Target:  5'- uCGCCGucgaggucGGCGGCuCGGCGCUGGucguggucgACUGCGa -3'
miRNA:   3'- -GCGGU--------UCGUUG-GCUGUGGCU---------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 26131 0.69 0.794699
Target:  5'- uCGCCGGuccgacGCcGCCGAgGCCGAGCaGCc -3'
miRNA:   3'- -GCGGUU------CGuUGGCUgUGGCUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 12058 0.69 0.794699
Target:  5'- gGCCGAGCucuGCggcaGACACCGAGauggGCa -3'
miRNA:   3'- gCGGUUCGu--UGg---CUGUGGCUUga--UGc -5'
23337 3' -52.4 NC_005259.1 + 45404 0.69 0.784909
Target:  5'- cCGCCGAGCGcGCUGAuggcCGCCGccGCUGCc -3'
miRNA:   3'- -GCGGUUCGU-UGGCU----GUGGCu-UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 7332 0.69 0.764866
Target:  5'- uCGCCGAGUAcguCGAgGCCGGACagACGu -3'
miRNA:   3'- -GCGGUUCGUug-GCUgUGGCUUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 2166 0.69 0.764866
Target:  5'- gCGUCGAGCcGCCGguuGCCGAggucaugggccGCUACGg -3'
miRNA:   3'- -GCGGUUCGuUGGCug-UGGCU-----------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 52270 0.69 0.764866
Target:  5'- gGCCGGGCAgacaggACCGGC-CCGA--UGCGc -3'
miRNA:   3'- gCGGUUCGU------UGGCUGuGGCUugAUGC- -5'
23337 3' -52.4 NC_005259.1 + 26439 0.69 0.754636
Target:  5'- cCGCCGAGCGggcggGCCGGuggGCCGAugUggaACGa -3'
miRNA:   3'- -GCGGUUCGU-----UGGCUg--UGGCUugA---UGC- -5'
23337 3' -52.4 NC_005259.1 + 5493 0.69 0.754636
Target:  5'- gCGCCGAGCGA---GgAUCGAGCUACGc -3'
miRNA:   3'- -GCGGUUCGUUggcUgUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 64693 0.68 0.80432
Target:  5'- cCGCCGAGCGauACCcacAUACCGAugcaccacgggcACUGCa -3'
miRNA:   3'- -GCGGUUCGU--UGGc--UGUGGCU------------UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 32222 0.68 0.80432
Target:  5'- -aCCGAcGCc-UCGGCACCGAGCUGCu -3'
miRNA:   3'- gcGGUU-CGuuGGCUGUGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 35523 0.68 0.80432
Target:  5'- cCGCCGGGCAcaccgcccGCCGuCGCCGAuCcGCc -3'
miRNA:   3'- -GCGGUUCGU--------UGGCuGUGGCUuGaUGc -5'
23337 3' -52.4 NC_005259.1 + 21119 0.68 0.80432
Target:  5'- aGCCGAGCGACUcaaGACaggaACCGAGgaAUGa -3'
miRNA:   3'- gCGGUUCGUUGG---CUG----UGGCUUgaUGC- -5'
23337 3' -52.4 NC_005259.1 + 47988 0.68 0.803366
Target:  5'- uGCCGGGCAgcgcaagACCGGCuugugUGAGCUGCu -3'
miRNA:   3'- gCGGUUCGU-------UGGCUGug---GCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 15367 0.68 0.811888
Target:  5'- uCGCCGAucugggcgagcugccGCAACCGugGCCGcGcacucccaagggugcGCUGCGu -3'
miRNA:   3'- -GCGGUU---------------CGUUGGCugUGGC-U---------------UGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.