Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23337 | 3' | -52.4 | NC_005259.1 | + | 26385 | 0.72 | 0.592501 |
Target: 5'- aGCCuguugcucGCGAuuCCGACGCCGGGCgcgGCGg -3' miRNA: 3'- gCGGuu------CGUU--GGCUGUGGCUUGa--UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 15584 | 0.72 | 0.603441 |
Target: 5'- gGCCAGcGCGACgGGcCGCaUGAGCUACGg -3' miRNA: 3'- gCGGUU-CGUUGgCU-GUG-GCUUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 7190 | 0.72 | 0.603441 |
Target: 5'- uGCCcGGCcuGCgGacGCACCGGGCUGCGg -3' miRNA: 3'- gCGGuUCGu-UGgC--UGUGGCUUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 43468 | 0.71 | 0.63637 |
Target: 5'- uCGUUGAGCAACCGGCcCUGAGCgucgaACGc -3' miRNA: 3'- -GCGGUUCGUUGGCUGuGGCUUGa----UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 35982 | 0.71 | 0.680172 |
Target: 5'- aCGgCGGGaAACCGACggcgagGCCGGACUGCa -3' miRNA: 3'- -GCgGUUCgUUGGCUG------UGGCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 26616 | 0.71 | 0.680172 |
Target: 5'- gCGCCGgaccGGUAGCCGAUAUCGAugGCcugGCGu -3' miRNA: 3'- -GCGGU----UCGUUGGCUGUGGCU--UGa--UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 50404 | 0.71 | 0.679083 |
Target: 5'- uCGCCGAGCGcgccggugccuugACCGGC-UCGGGCaGCGg -3' miRNA: 3'- -GCGGUUCGU-------------UGGCUGuGGCUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 27279 | 0.71 | 0.669263 |
Target: 5'- cCGCCuuGAGCcGCCGcugcacGCGCCGGAC-ACGg -3' miRNA: 3'- -GCGG--UUCGuUGGC------UGUGGCUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 18311 | 0.71 | 0.669263 |
Target: 5'- uGCCcGGUGugCGACACCGAggccGgUGCGu -3' miRNA: 3'- gCGGuUCGUugGCUGUGGCU----UgAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 14544 | 0.71 | 0.669263 |
Target: 5'- uGCCGAGUucguCCGGCagGCCGAGCggggaccgGCGa -3' miRNA: 3'- gCGGUUCGuu--GGCUG--UGGCUUGa-------UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 58970 | 0.71 | 0.66817 |
Target: 5'- gGUCGGGCAGCucgucggCGACGgCGAGCUugGc -3' miRNA: 3'- gCGGUUCGUUG-------GCUGUgGCUUGAugC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 12234 | 0.71 | 0.65832 |
Target: 5'- gGCCGGGCAAUgGucACACCGc-CUGCGa -3' miRNA: 3'- gCGGUUCGUUGgC--UGUGGCuuGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 26070 | 0.71 | 0.647352 |
Target: 5'- cCGCCGAGCAgucccccgagGCCGcCGCCGAGaagACc -3' miRNA: 3'- -GCGGUUCGU----------UGGCuGUGGCUUga-UGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 65988 | 0.71 | 0.646254 |
Target: 5'- gCGCCGAGCAGCCGcucgacguggugcGCACCcucgGGGCcGCa -3' miRNA: 3'- -GCGGUUCGUUGGC-------------UGUGG----CUUGaUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 43783 | 0.7 | 0.691036 |
Target: 5'- uCGCCGGGCAugagcagcGCgGGCACCGAGuccUUGCc -3' miRNA: 3'- -GCGGUUCGU--------UGgCUGUGGCUU---GAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 63427 | 0.7 | 0.691036 |
Target: 5'- uGCCGAGCAGCCG-C-UCGGGCgagACa -3' miRNA: 3'- gCGGUUCGUUGGCuGuGGCUUGa--UGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 42517 | 0.7 | 0.698607 |
Target: 5'- gGCCA-GCAGCCGuccggccccgauggGCACCGAGgugGCGg -3' miRNA: 3'- gCGGUuCGUUGGC--------------UGUGGCUUga-UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 66246 | 0.7 | 0.701842 |
Target: 5'- aGCCAucgacgcagcGCGGCCcGCGCCGGGCgGCGg -3' miRNA: 3'- gCGGUu---------CGUUGGcUGUGGCUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 17350 | 0.7 | 0.701842 |
Target: 5'- uCGCCGucgaggucGGCGGCuCGGCGCUGGucguggucgACUGCGa -3' miRNA: 3'- -GCGGU--------UCGUUG-GCUGUGGCU---------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 40664 | 0.7 | 0.712581 |
Target: 5'- uCGCCGAGCAGCgCGAgCGCCuuGgUGCu -3' miRNA: 3'- -GCGGUUCGUUG-GCU-GUGGcuUgAUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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