miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 7190 0.72 0.603441
Target:  5'- uGCCcGGCcuGCgGacGCACCGGGCUGCGg -3'
miRNA:   3'- gCGGuUCGu-UGgC--UGUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 7332 0.69 0.764866
Target:  5'- uCGCCGAGUAcguCGAgGCCGGACagACGu -3'
miRNA:   3'- -GCGGUUCGUug-GCUgUGGCUUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 8057 0.68 0.813761
Target:  5'- cCGCCGGucGCcGCCGACAUCGAGau-CGu -3'
miRNA:   3'- -GCGGUU--CGuUGGCUGUGGCUUgauGC- -5'
23337 3' -52.4 NC_005259.1 + 8314 0.67 0.88167
Target:  5'- cCGCCuugucgGAGCuGCCGACGgCGAucagccggucacGCUGCu -3'
miRNA:   3'- -GCGG------UUCGuUGGCUGUgGCU------------UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 9432 0.74 0.476052
Target:  5'- uGUCGAGCAGCCacACGCCGAGC-ACa -3'
miRNA:   3'- gCGGUUCGUUGGc-UGUGGCUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 9534 0.66 0.92216
Target:  5'- cCGCCGGGUcACCGGa---GAGCUGCc -3'
miRNA:   3'- -GCGGUUCGuUGGCUguggCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 12058 0.69 0.794699
Target:  5'- gGCCGAGCucuGCggcaGACACCGAGauggGCa -3'
miRNA:   3'- gCGGUUCGu--UGg---CUGUGGCUUga--UGc -5'
23337 3' -52.4 NC_005259.1 + 12234 0.71 0.65832
Target:  5'- gGCCGGGCAAUgGucACACCGc-CUGCGa -3'
miRNA:   3'- gCGGUUCGUUGgC--UGUGGCuuGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 13088 0.68 0.840904
Target:  5'- gGCCAuccgguGCcACCGACcCCGGcccgcucggcgGCUACGa -3'
miRNA:   3'- gCGGUu-----CGuUGGCUGuGGCU-----------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 13941 0.66 0.916088
Target:  5'- cCGCCA---AAUCGACGCCGGACc--- -3'
miRNA:   3'- -GCGGUucgUUGGCUGUGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 14331 0.67 0.88167
Target:  5'- cCGCCGcccgcgugcgGGCcGCCGACGCCaucAACUcACGu -3'
miRNA:   3'- -GCGGU----------UCGuUGGCUGUGGc--UUGA-UGC- -5'
23337 3' -52.4 NC_005259.1 + 14544 0.71 0.669263
Target:  5'- uGCCGAGUucguCCGGCagGCCGAGCggggaccgGCGa -3'
miRNA:   3'- gCGGUUCGuu--GGCUG--UGGCUUGa-------UGC- -5'
23337 3' -52.4 NC_005259.1 + 15149 0.66 0.903123
Target:  5'- gGCCAccucGGUGGCCGAgGCCGAGg---- -3'
miRNA:   3'- gCGGU----UCGUUGGCUgUGGCUUgaugc -5'
23337 3' -52.4 NC_005259.1 + 15367 0.68 0.811888
Target:  5'- uCGCCGAucugggcgagcugccGCAACCGugGCCGcGcacucccaagggugcGCUGCGu -3'
miRNA:   3'- -GCGGUU---------------CGUUGGCugUGGC-U---------------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 15584 0.72 0.603441
Target:  5'- gGCCAGcGCGACgGGcCGCaUGAGCUACGg -3'
miRNA:   3'- gCGGUU-CGUUGgCU-GUG-GCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 15859 0.75 0.464992
Target:  5'- uCGCCAAGCucGCCGcucucaucgggcACACCGAagagucgACUGCGc -3'
miRNA:   3'- -GCGGUUCGu-UGGC------------UGUGGCU-------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 16430 0.67 0.874001
Target:  5'- cCGUCGAGCGGCCcaaACCGGGCa--- -3'
miRNA:   3'- -GCGGUUCGUUGGcugUGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 16751 0.67 0.874001
Target:  5'- uCGCCcGGCuGCgugaGACACCGGACcaucACGa -3'
miRNA:   3'- -GCGGuUCGuUGg---CUGUGGCUUGa---UGC- -5'
23337 3' -52.4 NC_005259.1 + 17023 0.66 0.916088
Target:  5'- cCGCCAuccucGGC-GCUGGCAUCGAcaACcGCGa -3'
miRNA:   3'- -GCGGU-----UCGuUGGCUGUGGCU--UGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 17081 0.75 0.417444
Target:  5'- gCGUCAGGCcGCCGAUAUUGGGCUGuCGa -3'
miRNA:   3'- -GCGGUUCGuUGGCUGUGGCUUGAU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.